Sample Summary mesodermal_cell Summary Track Settings
 
Roadmap Epigenome mesodermal_cell Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF003CBR_H3K9me3  ENCFF003CBR H3K9me3    Data format 
     ENCFF007KFE_H3K4me3  ENCFF007KFE H3K4me3    Data format 
     ENCFF032JGQ_H3K27ac  ENCFF032JGQ H3K27ac    Data format 
     ENCFF044GLM_H3K36me3  ENCFF044GLM H3K36me3    Data format 
     ENCFF066XWI_H3K9me3  ENCFF066XWI H3K9me3    Data format 
     ENCFF075IPC_H3K27ac  ENCFF075IPC H3K27ac    Data format 
     ENCFF093YYU_H3K9me3  ENCFF093YYU H3K9me3    Data format 
     ENCFF094FUR_polyA_plus_RNA-seq  ENCFF094FUR polyA_plus_RNA-seq    Data format 
     ENCFF096IOQ_H3K9me3  ENCFF096IOQ H3K9me3    Data format 
     ENCFF102XWL_WGBS  ENCFF102XWL WGBS    Data format 
     ENCFF103NIX_polyA_plus_RNA-seq  ENCFF103NIX polyA_plus_RNA-seq    Data format 
     ENCFF110PDB_H3K36me3  ENCFF110PDB H3K36me3    Data format 
     ENCFF130DBX_H3K27ac  ENCFF130DBX H3K27ac    Data format 
     ENCFF148ALM_polyA_plus_RNA-seq  ENCFF148ALM polyA_plus_RNA-seq    Data format 
     ENCFF166WND_H3K4me3  ENCFF166WND H3K4me3    Data format 
     ENCFF175JXF_H3K27ac  ENCFF175JXF H3K27ac    Data format 
     ENCFF184RPI_H3K9me3  ENCFF184RPI H3K9me3    Data format 
     ENCFF213UXM_H3K9me3  ENCFF213UXM H3K9me3    Data format 
     ENCFF223DEZ_H3K27ac  ENCFF223DEZ H3K27ac    Data format 
     ENCFF231ORW_H3K9me3  ENCFF231ORW H3K9me3    Data format 
     ENCFF242AEF_H3K9me3  ENCFF242AEF H3K9me3    Data format 
     ENCFF246UHI_polyA_plus_RNA-seq  ENCFF246UHI polyA_plus_RNA-seq    Data format 
     ENCFF264YAM_H3K36me3  ENCFF264YAM H3K36me3    Data format 
     ENCFF270SIR_H3K27ac  ENCFF270SIR H3K27ac    Data format 
     ENCFF284ANB_H3K9me3  ENCFF284ANB H3K9me3    Data format 
     ENCFF290RGP_H3K36me3  ENCFF290RGP H3K36me3    Data format 
     ENCFF309DOP_WGBS  ENCFF309DOP WGBS    Data format 
     ENCFF313QGR_H3K4me3  ENCFF313QGR H3K4me3    Data format 
     ENCFF314NPX_H3K4me3  ENCFF314NPX H3K4me3    Data format 
     ENCFF319CHA_H3K4me1  ENCFF319CHA H3K4me1    Data format 
     ENCFF321BBM_WGBS  ENCFF321BBM WGBS    Data format 
     ENCFF337AFW_polyA_plus_RNA-seq  ENCFF337AFW polyA_plus_RNA-seq    Data format 
     ENCFF357FBN_polyA_plus_RNA-seq  ENCFF357FBN polyA_plus_RNA-seq    Data format 
     ENCFF368MHA_H3K27ac  ENCFF368MHA H3K27ac    Data format 
     ENCFF369UBB_H3K36me3  ENCFF369UBB H3K36me3    Data format 
     ENCFF373XPI_H3K4me1  ENCFF373XPI H3K4me1    Data format 
     ENCFF374OKL_polyA_plus_RNA-seq  ENCFF374OKL polyA_plus_RNA-seq    Data format 
     ENCFF376TDW_H3K27ac  ENCFF376TDW H3K27ac    Data format 
     ENCFF396QNK_H3K36me3  ENCFF396QNK H3K36me3    Data format 
     ENCFF397KPY_H3K4me3  ENCFF397KPY H3K4me3    Data format 
     ENCFF402XFI_H3K36me3  ENCFF402XFI H3K36me3    Data format 
     ENCFF409UDU_H3K4me3  ENCFF409UDU H3K4me3    Data format 
     ENCFF429KOP_H3K36me3  ENCFF429KOP H3K36me3    Data format 
     ENCFF429URY_H3K36me3  ENCFF429URY H3K36me3    Data format 
     ENCFF454UPE_H3K27ac  ENCFF454UPE H3K27ac    Data format 
     ENCFF457FNL_H3K4me3  ENCFF457FNL H3K4me3    Data format 
     ENCFF488JCS_H3K27ac  ENCFF488JCS H3K27ac    Data format 
     ENCFF515HAK_polyA_plus_RNA-seq  ENCFF515HAK polyA_plus_RNA-seq    Data format 
     ENCFF532ZRR_H3K9me3  ENCFF532ZRR H3K9me3    Data format 
     ENCFF534VBW_WGBS  ENCFF534VBW WGBS    Data format 
     ENCFF549NLH_H3K4me1  ENCFF549NLH H3K4me1    Data format 
     ENCFF555GFA_H3K9me3  ENCFF555GFA H3K9me3    Data format 
     ENCFF559YGT_H3K36me3  ENCFF559YGT H3K36me3    Data format 
     ENCFF576WXF_polyA_plus_RNA-seq  ENCFF576WXF polyA_plus_RNA-seq    Data format 
     ENCFF578WHT_WGBS  ENCFF578WHT WGBS    Data format 
     ENCFF610CEL_H3K27ac  ENCFF610CEL H3K27ac    Data format 
     ENCFF618WFU_H3K4me3  ENCFF618WFU H3K4me3    Data format 
     ENCFF630JSG_H3K9me3  ENCFF630JSG H3K9me3    Data format 
     ENCFF639EEY_H3K36me3  ENCFF639EEY H3K36me3    Data format 
     ENCFF685YRW_H3K4me1  ENCFF685YRW H3K4me1    Data format 
     ENCFF711PBB_polyA_plus_RNA-seq  ENCFF711PBB polyA_plus_RNA-seq    Data format 
     ENCFF717XCR_H3K4me3  ENCFF717XCR H3K4me3    Data format 
     ENCFF725OXG_H3K27ac  ENCFF725OXG H3K27ac    Data format 
     ENCFF770BEV_H3K4me3  ENCFF770BEV H3K4me3    Data format 
     ENCFF797RTN_H3K36me3  ENCFF797RTN H3K36me3    Data format 
     ENCFF808FHG_polyA_plus_RNA-seq  ENCFF808FHG polyA_plus_RNA-seq    Data format 
     ENCFF835RQG_WGBS  ENCFF835RQG WGBS    Data format 
     ENCFF901NEE_WGBS  ENCFF901NEE WGBS    Data format 
     ENCFF913MIB_H3K4me3  ENCFF913MIB H3K4me3    Data format 
     ENCFF984VZK_polyA_plus_RNA-seq  ENCFF984VZK polyA_plus_RNA-seq    Data format 
     ENCFF996IGG_H3K4me3  ENCFF996IGG H3K4me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:mesendoderm
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF