Sample Summary mucosa_of_stomach Summary Track Settings
 
Roadmap Epigenome mucosa_of_stomach Summary

Track collection: Sample Summary

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     ENCFF003GBT_H3K4me3  ENCFF003GBT H3K4me3    Data format 
     ENCFF016OQX_H3K9ac  ENCFF016OQX H3K9ac    Data format 
     ENCFF020KPS_H3K27me3  ENCFF020KPS H3K27me3    Data format 
     ENCFF033EHD_H3K4me1  ENCFF033EHD H3K4me1    Data format 
     ENCFF102TLL_H3K4me1  ENCFF102TLL H3K4me1    Data format 
     ENCFF125PDL_H3K27me3  ENCFF125PDL H3K27me3    Data format 
     ENCFF295DJH_H3K36me3  ENCFF295DJH H3K36me3    Data format 
     ENCFF343CJE_H3K36me3  ENCFF343CJE H3K36me3    Data format 
     ENCFF371BOR_H3K36me3  ENCFF371BOR H3K36me3    Data format 
     ENCFF374EWG_H3K4me3  ENCFF374EWG H3K4me3    Data format 
     ENCFF575QGX_H3K27me3  ENCFF575QGX H3K27me3    Data format 
     ENCFF605NSR_H3K36me3  ENCFF605NSR H3K36me3    Data format 
     ENCFF622TRE_H3K4me3  ENCFF622TRE H3K4me3    Data format 
     ENCFF649BYY_H3K9ac  ENCFF649BYY H3K9ac    Data format 
     ENCFF717DRC_H3K27me3  ENCFF717DRC H3K27me3    Data format 
     ENCFF775SLK_H3K9ac  ENCFF775SLK H3K9ac    Data format 
     ENCFF846GUF_H3K9me3  ENCFF846GUF H3K9me3    Data format 
     ENCFF865ZUH_H3K4me1  ENCFF865ZUH H3K4me1    Data format 
     ENCFF896NIM_H3K9me3  ENCFF896NIM H3K9me3    Data format 
     ENCFF898SKS_H3K4me3  ENCFF898SKS H3K4me3    Data format 
     ENCFF917MQI_H3K4me1  ENCFF917MQI H3K4me1    Data format 
     ENCFF935CUB_H3K9me3  ENCFF935CUB H3K9me3    Data format 
     ENCFF978HKV_H3K9me3  ENCFF978HKV H3K9me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:mucosa_of_rectum
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF