Sample Summary muscle_of_arm Summary Track Settings
 
Roadmap Epigenome muscle_of_arm Summary

Track collection: Sample Summary

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     ENCFF037NWT_polyA_plus_RNA-seq  ENCFF037NWT polyA_plus_RNA-seq    Data format 
     ENCFF050ROK_polyA_plus_RNA-seq  ENCFF050ROK polyA_plus_RNA-seq    Data format 
     ENCFF062QPU_polyA_plus_RNA-seq  ENCFF062QPU polyA_plus_RNA-seq    Data format 
     ENCFF092TTP_polyA_plus_RNA-seq  ENCFF092TTP polyA_plus_RNA-seq    Data format 
     ENCFF110RPH_polyA_plus_RNA-seq  ENCFF110RPH polyA_plus_RNA-seq    Data format 
     ENCFF119XJG_polyA_plus_RNA-seq  ENCFF119XJG polyA_plus_RNA-seq    Data format 
     ENCFF131RJY_DNase-seq  ENCFF131RJY DNase-seq    Data format 
     ENCFF144GMK_polyA_plus_RNA-seq  ENCFF144GMK polyA_plus_RNA-seq    Data format 
     ENCFF147PGS_DNase-seq  ENCFF147PGS DNase-seq    Data format 
     ENCFF170QVL_DNase-seq  ENCFF170QVL DNase-seq    Data format 
     ENCFF174TXJ_DNase-seq  ENCFF174TXJ DNase-seq    Data format 
     ENCFF176XCR_polyA_plus_RNA-seq  ENCFF176XCR polyA_plus_RNA-seq    Data format 
     ENCFF183JSS_DNase-seq  ENCFF183JSS DNase-seq    Data format 
     ENCFF197ELD_polyA_plus_RNA-seq  ENCFF197ELD polyA_plus_RNA-seq    Data format 
     ENCFF207CYC_polyA_plus_RNA-seq  ENCFF207CYC polyA_plus_RNA-seq    Data format 
     ENCFF213CNY_polyA_plus_RNA-seq  ENCFF213CNY polyA_plus_RNA-seq    Data format 
     ENCFF225QDX_polyA_plus_RNA-seq  ENCFF225QDX polyA_plus_RNA-seq    Data format 
     ENCFF237MAH_polyA_plus_RNA-seq  ENCFF237MAH polyA_plus_RNA-seq    Data format 
     ENCFF254PWG_polyA_plus_RNA-seq  ENCFF254PWG polyA_plus_RNA-seq    Data format 
     ENCFF259GAI_DNase-seq  ENCFF259GAI DNase-seq    Data format 
     ENCFF276VCV_DNase-seq  ENCFF276VCV DNase-seq    Data format 
     ENCFF287IWH_polyA_plus_RNA-seq  ENCFF287IWH polyA_plus_RNA-seq    Data format 
     ENCFF293NBG_DNase-seq  ENCFF293NBG DNase-seq    Data format 
     ENCFF298XUL_DNase-seq  ENCFF298XUL DNase-seq    Data format 
     ENCFF304RDA_polyA_plus_RNA-seq  ENCFF304RDA polyA_plus_RNA-seq    Data format 
     ENCFF304WVP_polyA_plus_RNA-seq  ENCFF304WVP polyA_plus_RNA-seq    Data format 
     ENCFF306FZS_polyA_plus_RNA-seq  ENCFF306FZS polyA_plus_RNA-seq    Data format 
     ENCFF309YCI_polyA_plus_RNA-seq  ENCFF309YCI polyA_plus_RNA-seq    Data format 
     ENCFF346VKE_DNase-seq  ENCFF346VKE DNase-seq    Data format 
     ENCFF353ICZ_polyA_plus_RNA-seq  ENCFF353ICZ polyA_plus_RNA-seq    Data format 
     ENCFF355AVB_polyA_plus_RNA-seq  ENCFF355AVB polyA_plus_RNA-seq    Data format 
     ENCFF359ITR_polyA_plus_RNA-seq  ENCFF359ITR polyA_plus_RNA-seq    Data format 
     ENCFF364MWG_polyA_plus_RNA-seq  ENCFF364MWG polyA_plus_RNA-seq    Data format 
     ENCFF382MJD_polyA_plus_RNA-seq  ENCFF382MJD polyA_plus_RNA-seq    Data format 
     ENCFF404QLA_polyA_plus_RNA-seq  ENCFF404QLA polyA_plus_RNA-seq    Data format 
     ENCFF428DTK_DNase-seq  ENCFF428DTK DNase-seq    Data format 
     ENCFF437FTN_polyA_plus_RNA-seq  ENCFF437FTN polyA_plus_RNA-seq    Data format 
     ENCFF465JBU_polyA_plus_RNA-seq  ENCFF465JBU polyA_plus_RNA-seq    Data format 
     ENCFF478TTG_DNase-seq  ENCFF478TTG DNase-seq    Data format 
     ENCFF506FQH_polyA_plus_RNA-seq  ENCFF506FQH polyA_plus_RNA-seq    Data format 
     ENCFF518ZPG_polyA_plus_RNA-seq  ENCFF518ZPG polyA_plus_RNA-seq    Data format 
     ENCFF522SCF_polyA_plus_RNA-seq  ENCFF522SCF polyA_plus_RNA-seq    Data format 
     ENCFF527AEJ_DNase-seq  ENCFF527AEJ DNase-seq    Data format 
     ENCFF529MMP_DNase-seq  ENCFF529MMP DNase-seq    Data format 
     ENCFF547CPF_DNase-seq  ENCFF547CPF DNase-seq    Data format 
     ENCFF552OOR_DNase-seq  ENCFF552OOR DNase-seq    Data format 
     ENCFF555NPV_DNase-seq  ENCFF555NPV DNase-seq    Data format 
     ENCFF561LKS_DNase-seq  ENCFF561LKS DNase-seq    Data format 
     ENCFF565FOF_polyA_plus_RNA-seq  ENCFF565FOF polyA_plus_RNA-seq    Data format 
     ENCFF569NAO_polyA_plus_RNA-seq  ENCFF569NAO polyA_plus_RNA-seq    Data format 
     ENCFF575EKU_DNase-seq  ENCFF575EKU DNase-seq    Data format 
     ENCFF606NQU_polyA_plus_RNA-seq  ENCFF606NQU polyA_plus_RNA-seq    Data format 
     ENCFF616SJL_polyA_plus_RNA-seq  ENCFF616SJL polyA_plus_RNA-seq    Data format 
     ENCFF636XBE_DNase-seq  ENCFF636XBE DNase-seq    Data format 
     ENCFF643BUN_polyA_plus_RNA-seq  ENCFF643BUN polyA_plus_RNA-seq    Data format 
     ENCFF644WCO_DNase-seq  ENCFF644WCO DNase-seq    Data format 
     ENCFF652EOG_DNase-seq  ENCFF652EOG DNase-seq    Data format 
     ENCFF663PJS_polyA_plus_RNA-seq  ENCFF663PJS polyA_plus_RNA-seq    Data format 
     ENCFF676QAV_polyA_plus_RNA-seq  ENCFF676QAV polyA_plus_RNA-seq    Data format 
     ENCFF677VFH_DNase-seq  ENCFF677VFH DNase-seq    Data format 
     ENCFF681LTR_DNase-seq  ENCFF681LTR DNase-seq    Data format 
     ENCFF713ZMW_polyA_plus_RNA-seq  ENCFF713ZMW polyA_plus_RNA-seq    Data format 
     ENCFF724NQX_polyA_plus_RNA-seq  ENCFF724NQX polyA_plus_RNA-seq    Data format 
     ENCFF736ZAN_DNase-seq  ENCFF736ZAN DNase-seq    Data format 
     ENCFF763PVW_polyA_plus_RNA-seq  ENCFF763PVW polyA_plus_RNA-seq    Data format 
     ENCFF778GKQ_DNase-seq  ENCFF778GKQ DNase-seq    Data format 
     ENCFF789PQN_DNase-seq  ENCFF789PQN DNase-seq    Data format 
     ENCFF824QUG_polyA_plus_RNA-seq  ENCFF824QUG polyA_plus_RNA-seq    Data format 
     ENCFF842DVR_polyA_plus_RNA-seq  ENCFF842DVR polyA_plus_RNA-seq    Data format 
     ENCFF851IQY_DNase-seq  ENCFF851IQY DNase-seq    Data format 
     ENCFF873UZS_polyA_plus_RNA-seq  ENCFF873UZS polyA_plus_RNA-seq    Data format 
     ENCFF897JFY_DNase-seq  ENCFF897JFY DNase-seq    Data format 
     ENCFF900QRE_polyA_plus_RNA-seq  ENCFF900QRE polyA_plus_RNA-seq    Data format 
     ENCFF903LEE_DNase-seq  ENCFF903LEE DNase-seq    Data format 
     ENCFF914QJD_polyA_plus_RNA-seq  ENCFF914QJD polyA_plus_RNA-seq    Data format 
     ENCFF915UNO_polyA_plus_RNA-seq  ENCFF915UNO polyA_plus_RNA-seq    Data format 
     ENCFF924PVB_DNase-seq  ENCFF924PVB DNase-seq    Data format 
     ENCFF935RUX_DNase-seq  ENCFF935RUX DNase-seq    Data format 
     ENCFF941ILF_DNase-seq  ENCFF941ILF DNase-seq    Data format 
     ENCFF947YTM_polyA_plus_RNA-seq  ENCFF947YTM polyA_plus_RNA-seq    Data format 
     ENCFF963NPI_DNase-seq  ENCFF963NPI DNase-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:signal_of_unique_reads
Sample:left_renal_pelvis
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF