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Roadmap Epigenome muscle_of_back Summary

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     ENCFF023RIB_polyA_plus_RNA-seq  ENCFF023RIB polyA_plus_RNA-seq    Data format 
     ENCFF027CXS_polyA_plus_RNA-seq  ENCFF027CXS polyA_plus_RNA-seq    Data format 
     ENCFF034GYI_DNase-seq  ENCFF034GYI DNase-seq    Data format 
     ENCFF044CTX_DNase-seq  ENCFF044CTX DNase-seq    Data format 
     ENCFF046IOO_polyA_plus_RNA-seq  ENCFF046IOO polyA_plus_RNA-seq    Data format 
     ENCFF123UWT_DNase-seq  ENCFF123UWT DNase-seq    Data format 
     ENCFF126XPP_polyA_plus_RNA-seq  ENCFF126XPP polyA_plus_RNA-seq    Data format 
     ENCFF146OQW_polyA_plus_RNA-seq  ENCFF146OQW polyA_plus_RNA-seq    Data format 
     ENCFF149MJD_polyA_plus_RNA-seq  ENCFF149MJD polyA_plus_RNA-seq    Data format 
     ENCFF149XYF_DNase-seq  ENCFF149XYF DNase-seq    Data format 
     ENCFF167DZY_DNase-seq  ENCFF167DZY DNase-seq    Data format 
     ENCFF188VFM_DNase-seq  ENCFF188VFM DNase-seq    Data format 
     ENCFF190UUX_polyA_plus_RNA-seq  ENCFF190UUX polyA_plus_RNA-seq    Data format 
     ENCFF210TEC_polyA_plus_RNA-seq  ENCFF210TEC polyA_plus_RNA-seq    Data format 
     ENCFF219EJQ_polyA_plus_RNA-seq  ENCFF219EJQ polyA_plus_RNA-seq    Data format 
     ENCFF294KIK_polyA_plus_RNA-seq  ENCFF294KIK polyA_plus_RNA-seq    Data format 
     ENCFF302BVR_DNase-seq  ENCFF302BVR DNase-seq    Data format 
     ENCFF343WYY_polyA_plus_RNA-seq  ENCFF343WYY polyA_plus_RNA-seq    Data format 
     ENCFF347FTK_polyA_plus_RNA-seq  ENCFF347FTK polyA_plus_RNA-seq    Data format 
     ENCFF354SDU_polyA_plus_RNA-seq  ENCFF354SDU polyA_plus_RNA-seq    Data format 
     ENCFF373WGS_polyA_plus_RNA-seq  ENCFF373WGS polyA_plus_RNA-seq    Data format 
     ENCFF384ZUW_polyA_plus_RNA-seq  ENCFF384ZUW polyA_plus_RNA-seq    Data format 
     ENCFF388QDD_polyA_plus_RNA-seq  ENCFF388QDD polyA_plus_RNA-seq    Data format 
     ENCFF397LNH_polyA_plus_RNA-seq  ENCFF397LNH polyA_plus_RNA-seq    Data format 
     ENCFF408WKS_polyA_plus_RNA-seq  ENCFF408WKS polyA_plus_RNA-seq    Data format 
     ENCFF413KYW_DNase-seq  ENCFF413KYW DNase-seq    Data format 
     ENCFF415VWC_DNase-seq  ENCFF415VWC DNase-seq    Data format 
     ENCFF430LQC_polyA_plus_RNA-seq  ENCFF430LQC polyA_plus_RNA-seq    Data format 
     ENCFF470VWE_polyA_plus_RNA-seq  ENCFF470VWE polyA_plus_RNA-seq    Data format 
     ENCFF483IQJ_polyA_plus_RNA-seq  ENCFF483IQJ polyA_plus_RNA-seq    Data format 
     ENCFF489HQO_DNase-seq  ENCFF489HQO DNase-seq    Data format 
     ENCFF499LIJ_DNase-seq  ENCFF499LIJ DNase-seq    Data format 
     ENCFF518MTE_polyA_plus_RNA-seq  ENCFF518MTE polyA_plus_RNA-seq    Data format 
     ENCFF519CVR_polyA_plus_RNA-seq  ENCFF519CVR polyA_plus_RNA-seq    Data format 
     ENCFF530OAF_polyA_plus_RNA-seq  ENCFF530OAF polyA_plus_RNA-seq    Data format 
     ENCFF537KVD_DNase-seq  ENCFF537KVD DNase-seq    Data format 
     ENCFF545YJA_DNase-seq  ENCFF545YJA DNase-seq    Data format 
     ENCFF553HAG_polyA_plus_RNA-seq  ENCFF553HAG polyA_plus_RNA-seq    Data format 
     ENCFF577QJI_DNase-seq  ENCFF577QJI DNase-seq    Data format 
     ENCFF581JDF_DNase-seq  ENCFF581JDF DNase-seq    Data format 
     ENCFF589RFM_polyA_plus_RNA-seq  ENCFF589RFM polyA_plus_RNA-seq    Data format 
     ENCFF590WBY_polyA_plus_RNA-seq  ENCFF590WBY polyA_plus_RNA-seq    Data format 
     ENCFF596JMX_DNase-seq  ENCFF596JMX DNase-seq    Data format 
     ENCFF599RKD_polyA_plus_RNA-seq  ENCFF599RKD polyA_plus_RNA-seq    Data format 
     ENCFF611KVB_polyA_plus_RNA-seq  ENCFF611KVB polyA_plus_RNA-seq    Data format 
     ENCFF619PMY_DNase-seq  ENCFF619PMY DNase-seq    Data format 
     ENCFF630CTN_polyA_plus_RNA-seq  ENCFF630CTN polyA_plus_RNA-seq    Data format 
     ENCFF633OJC_polyA_plus_RNA-seq  ENCFF633OJC polyA_plus_RNA-seq    Data format 
     ENCFF641YCY_polyA_plus_RNA-seq  ENCFF641YCY polyA_plus_RNA-seq    Data format 
     ENCFF655ADL_DNase-seq  ENCFF655ADL DNase-seq    Data format 
     ENCFF655NDW_DNase-seq  ENCFF655NDW DNase-seq    Data format 
     ENCFF673ZGS_polyA_plus_RNA-seq  ENCFF673ZGS polyA_plus_RNA-seq    Data format 
     ENCFF709VQA_DNase-seq  ENCFF709VQA DNase-seq    Data format 
     ENCFF718ICW_polyA_plus_RNA-seq  ENCFF718ICW polyA_plus_RNA-seq    Data format 
     ENCFF739XXP_DNase-seq  ENCFF739XXP DNase-seq    Data format 
     ENCFF742UHM_polyA_plus_RNA-seq  ENCFF742UHM polyA_plus_RNA-seq    Data format 
     ENCFF748UWO_DNase-seq  ENCFF748UWO DNase-seq    Data format 
     ENCFF758ZXY_DNase-seq  ENCFF758ZXY DNase-seq    Data format 
     ENCFF760ZEE_polyA_plus_RNA-seq  ENCFF760ZEE polyA_plus_RNA-seq    Data format 
     ENCFF765XWJ_polyA_plus_RNA-seq  ENCFF765XWJ polyA_plus_RNA-seq    Data format 
     ENCFF769LQI_polyA_plus_RNA-seq  ENCFF769LQI polyA_plus_RNA-seq    Data format 
     ENCFF779BIA_DNase-seq  ENCFF779BIA DNase-seq    Data format 
     ENCFF779FPU_DNase-seq  ENCFF779FPU DNase-seq    Data format 
     ENCFF839XJQ_DNase-seq  ENCFF839XJQ DNase-seq    Data format 
     ENCFF847HLP_DNase-seq  ENCFF847HLP DNase-seq    Data format 
     ENCFF853TZW_polyA_plus_RNA-seq  ENCFF853TZW polyA_plus_RNA-seq    Data format 
     ENCFF954LCL_DNase-seq  ENCFF954LCL DNase-seq    Data format 
     ENCFF990QEC_DNase-seq  ENCFF990QEC DNase-seq    Data format 
     ENCFF997ASP_DNase-seq  ENCFF997ASP DNase-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:signal_of_unique_reads
Sample:muscle_of_arm
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF