Sample Summary muscle_of_leg Summary Track Settings
 
Roadmap Epigenome muscle_of_leg Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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All subtracks:
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     ENCFF012HNX_H3K4me1  ENCFF012HNX H3K4me1    Data format 
     ENCFF037EFJ_polyA_plus_RNA-seq  ENCFF037EFJ polyA_plus_RNA-seq    Data format 
     ENCFF069SFF_polyA_plus_RNA-seq  ENCFF069SFF polyA_plus_RNA-seq    Data format 
     ENCFF069WLE_WGBS  ENCFF069WLE WGBS    Data format 
     ENCFF074OGK_polyA_plus_RNA-seq  ENCFF074OGK polyA_plus_RNA-seq    Data format 
     ENCFF078ZYM_polyA_plus_RNA-seq  ENCFF078ZYM polyA_plus_RNA-seq    Data format 
     ENCFF082AUZ_DNase-seq  ENCFF082AUZ DNase-seq    Data format 
     ENCFF087KKE_H3K9me3  ENCFF087KKE H3K9me3    Data format 
     ENCFF117PQX_polyA_plus_RNA-seq  ENCFF117PQX polyA_plus_RNA-seq    Data format 
     ENCFF131DEL_DNase-seq  ENCFF131DEL DNase-seq    Data format 
     ENCFF132DSA_H3K9me3  ENCFF132DSA H3K9me3    Data format 
     ENCFF135GKT_DNase-seq  ENCFF135GKT DNase-seq    Data format 
     ENCFF137XKI_polyA_plus_RNA-seq  ENCFF137XKI polyA_plus_RNA-seq    Data format 
     ENCFF154TLD_polyA_plus_RNA-seq  ENCFF154TLD polyA_plus_RNA-seq    Data format 
     ENCFF160KJF_DNase-seq  ENCFF160KJF DNase-seq    Data format 
     ENCFF179RUT_polyA_plus_RNA-seq  ENCFF179RUT polyA_plus_RNA-seq    Data format 
     ENCFF191QGK_DNase-seq  ENCFF191QGK DNase-seq    Data format 
     ENCFF198FAC_DNase-seq  ENCFF198FAC DNase-seq    Data format 
     ENCFF208PLT_H3K4me1  ENCFF208PLT H3K4me1    Data format 
     ENCFF220IQH_H3K9me3  ENCFF220IQH H3K9me3    Data format 
     ENCFF238DZO_polyA_plus_RNA-seq  ENCFF238DZO polyA_plus_RNA-seq    Data format 
     ENCFF252YGC_WGBS  ENCFF252YGC WGBS    Data format 
     ENCFF253CIF_polyA_plus_RNA-seq  ENCFF253CIF polyA_plus_RNA-seq    Data format 
     ENCFF257SNK_polyA_plus_RNA-seq  ENCFF257SNK polyA_plus_RNA-seq    Data format 
     ENCFF262PSG_polyA_plus_RNA-seq  ENCFF262PSG polyA_plus_RNA-seq    Data format 
     ENCFF296XLH_polyA_plus_RNA-seq  ENCFF296XLH polyA_plus_RNA-seq    Data format 
     ENCFF297EFT_H3K9me3  ENCFF297EFT H3K9me3    Data format 
     ENCFF314DRG_polyA_plus_RNA-seq  ENCFF314DRG polyA_plus_RNA-seq    Data format 
     ENCFF320PWH_H3K4me3  ENCFF320PWH H3K4me3    Data format 
     ENCFF335LNK_H3K36me3  ENCFF335LNK H3K36me3    Data format 
     ENCFF344UMD_polyA_plus_RNA-seq  ENCFF344UMD polyA_plus_RNA-seq    Data format 
     ENCFF362YRX_H3K4me3  ENCFF362YRX H3K4me3    Data format 
     ENCFF367SXD_H3K9me3  ENCFF367SXD H3K9me3    Data format 
     ENCFF376QDP_polyA_plus_RNA-seq  ENCFF376QDP polyA_plus_RNA-seq    Data format 
     ENCFF378TNA_H3K9me3  ENCFF378TNA H3K9me3    Data format 
     ENCFF392SWN_DNase-seq  ENCFF392SWN DNase-seq    Data format 
     ENCFF420RNX_H3K27ac  ENCFF420RNX H3K27ac    Data format 
     ENCFF437WRG_polyA_plus_RNA-seq  ENCFF437WRG polyA_plus_RNA-seq    Data format 
     ENCFF478TKF_DNase-seq  ENCFF478TKF DNase-seq    Data format 
     ENCFF483VJJ_DNase-seq  ENCFF483VJJ DNase-seq    Data format 
     ENCFF490SYS_polyA_plus_RNA-seq  ENCFF490SYS polyA_plus_RNA-seq    Data format 
     ENCFF493YZU_H3K36me3  ENCFF493YZU H3K36me3    Data format 
     ENCFF498QSZ_polyA_plus_RNA-seq  ENCFF498QSZ polyA_plus_RNA-seq    Data format 
     ENCFF499QCN_H3K36me3  ENCFF499QCN H3K36me3    Data format 
     ENCFF502QQC_DNase-seq  ENCFF502QQC DNase-seq    Data format 
     ENCFF514PEI_polyA_plus_RNA-seq  ENCFF514PEI polyA_plus_RNA-seq    Data format 
     ENCFF530VVB_H3K27me3  ENCFF530VVB H3K27me3    Data format 
     ENCFF533OMM_H3K9me3  ENCFF533OMM H3K9me3    Data format 
     ENCFF578JKP_WGBS  ENCFF578JKP WGBS    Data format 
     ENCFF594TMO_polyA_plus_RNA-seq  ENCFF594TMO polyA_plus_RNA-seq    Data format 
     ENCFF608EMH_H3K27me3  ENCFF608EMH H3K27me3    Data format 
     ENCFF615AWM_H3K9me3  ENCFF615AWM H3K9me3    Data format 
     ENCFF616ECV_H3K4me1  ENCFF616ECV H3K4me1    Data format 
     ENCFF639FLQ_DNase-seq  ENCFF639FLQ DNase-seq    Data format 
     ENCFF650IHA_polyA_plus_RNA-seq  ENCFF650IHA polyA_plus_RNA-seq    Data format 
     ENCFF653PWS_DNase-seq  ENCFF653PWS DNase-seq    Data format 
     ENCFF656PZD_polyA_plus_RNA-seq  ENCFF656PZD polyA_plus_RNA-seq    Data format 
     ENCFF657PLZ_DNase-seq  ENCFF657PLZ DNase-seq    Data format 
     ENCFF674WBH_DNase-seq  ENCFF674WBH DNase-seq    Data format 
     ENCFF680UAP_H3K36me3  ENCFF680UAP H3K36me3    Data format 
     ENCFF681FNT_polyA_plus_RNA-seq  ENCFF681FNT polyA_plus_RNA-seq    Data format 
     ENCFF681PUB_H3K27me3  ENCFF681PUB H3K27me3    Data format 
     ENCFF683HAF_DNase-seq  ENCFF683HAF DNase-seq    Data format 
     ENCFF683YYF_polyA_plus_RNA-seq  ENCFF683YYF polyA_plus_RNA-seq    Data format 
     ENCFF685RNO_polyA_plus_RNA-seq  ENCFF685RNO polyA_plus_RNA-seq    Data format 
     ENCFF697QFH_H3K9me3  ENCFF697QFH H3K9me3    Data format 
     ENCFF716VIS_DNase-seq  ENCFF716VIS DNase-seq    Data format 
     ENCFF750QIV_polyA_plus_RNA-seq  ENCFF750QIV polyA_plus_RNA-seq    Data format 
     ENCFF761WQC_polyA_plus_RNA-seq  ENCFF761WQC polyA_plus_RNA-seq    Data format 
     ENCFF768JKP_H3K27me3  ENCFF768JKP H3K27me3    Data format 
     ENCFF769YBP_H3K9me3  ENCFF769YBP H3K9me3    Data format 
     ENCFF779SYM_DNase-seq  ENCFF779SYM DNase-seq    Data format 
     ENCFF782ZWK_H3K4me1  ENCFF782ZWK H3K4me1    Data format 
     ENCFF787HPF_H3K4me3  ENCFF787HPF H3K4me3    Data format 
     ENCFF798GFU_DNase-seq  ENCFF798GFU DNase-seq    Data format 
     ENCFF803KRQ_polyA_plus_RNA-seq  ENCFF803KRQ polyA_plus_RNA-seq    Data format 
     ENCFF813VDR_DNase-seq  ENCFF813VDR DNase-seq    Data format 
     ENCFF825FCO_H3K9me3  ENCFF825FCO H3K9me3    Data format 
     ENCFF825UDN_polyA_plus_RNA-seq  ENCFF825UDN polyA_plus_RNA-seq    Data format 
     ENCFF835ERC_DNase-seq  ENCFF835ERC DNase-seq    Data format 
     ENCFF835USO_polyA_plus_RNA-seq  ENCFF835USO polyA_plus_RNA-seq    Data format 
     ENCFF844CIZ_polyA_plus_RNA-seq  ENCFF844CIZ polyA_plus_RNA-seq    Data format 
     ENCFF846ZCR_polyA_plus_RNA-seq  ENCFF846ZCR polyA_plus_RNA-seq    Data format 
     ENCFF858BSX_DNase-seq  ENCFF858BSX DNase-seq    Data format 
     ENCFF867JCE_H3K27ac  ENCFF867JCE H3K27ac    Data format 
     ENCFF875TFI_DNase-seq  ENCFF875TFI DNase-seq    Data format 
     ENCFF884CFC_polyA_plus_RNA-seq  ENCFF884CFC polyA_plus_RNA-seq    Data format 
     ENCFF895QPR_DNase-seq  ENCFF895QPR DNase-seq    Data format 
     ENCFF906KHN_DNase-seq  ENCFF906KHN DNase-seq    Data format 
     ENCFF918GTL_H3K4me3  ENCFF918GTL H3K4me3    Data format 
     ENCFF919RMD_H3K9me3  ENCFF919RMD H3K9me3    Data format 
     ENCFF920AZN_DNase-seq  ENCFF920AZN DNase-seq    Data format 
     ENCFF941TFB_polyA_plus_RNA-seq  ENCFF941TFB polyA_plus_RNA-seq    Data format 
     ENCFF951UGT_polyA_plus_RNA-seq  ENCFF951UGT polyA_plus_RNA-seq    Data format 
     ENCFF966KYV_DNase-seq  ENCFF966KYV DNase-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:muscle_layer_of_duodenum
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF