Sample Summary muscle_of_trunk Summary Track Settings
 
Roadmap Epigenome muscle_of_trunk Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF007LJG_polyA_plus_RNA-seq  ENCFF007LJG polyA_plus_RNA-seq    Data format 
     ENCFF022BPF_H3K36me3  ENCFF022BPF H3K36me3    Data format 
     ENCFF030NZF_H3K4me3  ENCFF030NZF H3K4me3    Data format 
     ENCFF100ZDL_H3K27ac  ENCFF100ZDL H3K27ac    Data format 
     ENCFF103HHO_H3K36me3  ENCFF103HHO H3K36me3    Data format 
     ENCFF103LVP_H3K4me1  ENCFF103LVP H3K4me1    Data format 
     ENCFF124NOK_H3K27ac  ENCFF124NOK H3K27ac    Data format 
     ENCFF135IDS_WGBS  ENCFF135IDS WGBS    Data format 
     ENCFF190CCR_H3K9me3  ENCFF190CCR H3K9me3    Data format 
     ENCFF205ZQF_H3K36me3  ENCFF205ZQF H3K36me3    Data format 
     ENCFF237SLF_H3K9me3  ENCFF237SLF H3K9me3    Data format 
     ENCFF243ZOW_H3K27me3  ENCFF243ZOW H3K27me3    Data format 
     ENCFF257DIP_H3K4me3  ENCFF257DIP H3K4me3    Data format 
     ENCFF273QJO_H3K4me1  ENCFF273QJO H3K4me1    Data format 
     ENCFF291HQC_H3K27ac  ENCFF291HQC H3K27ac    Data format 
     ENCFF324DLM_DNase-seq  ENCFF324DLM DNase-seq    Data format 
     ENCFF416PYY_H3K36me3  ENCFF416PYY H3K36me3    Data format 
     ENCFF434RLW_polyA_plus_RNA-seq  ENCFF434RLW polyA_plus_RNA-seq    Data format 
     ENCFF447IZD_polyA_plus_RNA-seq  ENCFF447IZD polyA_plus_RNA-seq    Data format 
     ENCFF448PPG_WGBS  ENCFF448PPG WGBS    Data format 
     ENCFF466LOF_H3K4me1  ENCFF466LOF H3K4me1    Data format 
     ENCFF484VHZ_DNase-seq  ENCFF484VHZ DNase-seq    Data format 
     ENCFF509KEW_H3K27ac  ENCFF509KEW H3K27ac    Data format 
     ENCFF532XMV_polyA_plus_RNA-seq  ENCFF532XMV polyA_plus_RNA-seq    Data format 
     ENCFF559ZBC_polyA_plus_RNA-seq  ENCFF559ZBC polyA_plus_RNA-seq    Data format 
     ENCFF562EUF_DNase-seq  ENCFF562EUF DNase-seq    Data format 
     ENCFF581DIL_H3K4me3  ENCFF581DIL H3K4me3    Data format 
     ENCFF586WXY_H3K27me3  ENCFF586WXY H3K27me3    Data format 
     ENCFF656QWS_H3K9me3  ENCFF656QWS H3K9me3    Data format 
     ENCFF680LKL_H3K4me1  ENCFF680LKL H3K4me1    Data format 
     ENCFF681ZMB_WGBS  ENCFF681ZMB WGBS    Data format 
     ENCFF708CNF_H3K9me3  ENCFF708CNF H3K9me3    Data format 
     ENCFF736QYT_DNase-seq  ENCFF736QYT DNase-seq    Data format 
     ENCFF768HQP_H3K4me3  ENCFF768HQP H3K4me3    Data format 
     ENCFF934JEL_H3K27me3  ENCFF934JEL H3K27me3    Data format 
     ENCFF941XTI_DNase-seq  ENCFF941XTI DNase-seq    Data format 
     ENCFF946TCS_H3K27me3  ENCFF946TCS H3K27me3    Data format 
     ENCFF954BBI_polyA_plus_RNA-seq  ENCFF954BBI polyA_plus_RNA-seq    Data format 
     ENCFF959ITI_DNase-seq  ENCFF959ITI DNase-seq    Data format 
    
Metadata:
Assay:WGBS
OutputType:CpG_sites_coverage
Sample:muscle_of_leg
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF