Sample Summary neuron Summary Track Settings
 
Roadmap Epigenome neuron Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
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     ENCFF002FMZ_H3K27me3  ENCFF002FMZ H3K27me3    Data format 
     ENCFF005SHT_H3K4me3  ENCFF005SHT H3K4me3    Data format 
     ENCFF056BYE_H3K4me3  ENCFF056BYE H3K4me3    Data format 
     ENCFF064EGK_H3K4me3  ENCFF064EGK H3K4me3    Data format 
     ENCFF073ECF_H2AFZ  ENCFF073ECF H2AFZ    Data format 
     ENCFF113XMX_H3K4me1  ENCFF113XMX H3K4me1    Data format 
     ENCFF160LJM_H3K4me3  ENCFF160LJM H3K4me3    Data format 
     ENCFF265GQJ_H3K4me1  ENCFF265GQJ H3K4me1    Data format 
     ENCFF285JOX_H3K27me3  ENCFF285JOX H3K27me3    Data format 
     ENCFF468IZJ_H2AFZ  ENCFF468IZJ H2AFZ    Data format 
     ENCFF473WFD_H3K4me3  ENCFF473WFD H3K4me3    Data format 
     ENCFF496RWX_H3K9me3  ENCFF496RWX H3K9me3    Data format 
     ENCFF548EWI_H3K4me3  ENCFF548EWI H3K4me3    Data format 
     ENCFF588UZN_H2AFZ  ENCFF588UZN H2AFZ    Data format 
     ENCFF669ZWK_H3K9me3  ENCFF669ZWK H3K9me3    Data format 
     ENCFF679VOH_H3K27me3  ENCFF679VOH H3K27me3    Data format 
     ENCFF684OYD_H3K4me3  ENCFF684OYD H3K4me3    Data format 
     ENCFF704XUB_H3K4me3  ENCFF704XUB H3K4me3    Data format 
     ENCFF732RED_H3K4me3  ENCFF732RED H3K4me3    Data format 
     ENCFF761ZPO_H3K4me3  ENCFF761ZPO H3K4me3    Data format 
     ENCFF770SEF_H3K27me3  ENCFF770SEF H3K27me3    Data format 
     ENCFF789BFV_H3K4me3  ENCFF789BFV H3K4me3    Data format 
     ENCFF794IEV_H3K36me3  ENCFF794IEV H3K36me3    Data format 
     ENCFF803MGP_H3K4me1  ENCFF803MGP H3K4me1    Data format 
     ENCFF818JKG_H3K9me3  ENCFF818JKG H3K9me3    Data format 
     ENCFF854NIT_H3K36me3  ENCFF854NIT H3K36me3    Data format 
     ENCFF869ZLL_H3K9me3  ENCFF869ZLL H3K9me3    Data format 
     ENCFF915CMM_H3K36me3  ENCFF915CMM H3K36me3    Data format 
     ENCFF916CXF_H3K4me3  ENCFF916CXF H3K4me3    Data format 
     ENCFF948KLN_H2AFZ  ENCFF948KLN H2AFZ    Data format 
     ENCFF950LSJ_H3K4me1  ENCFF950LSJ H3K4me1    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:natural_killer_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF