Sample Summary ovary Summary Track Settings
 
Roadmap Epigenome ovary Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

Display mode:       Reset to defaults

Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF083NUK_H3K27ac  ENCFF083NUK H3K27ac    Data format 
     ENCFF088WXE_H3K27ac  ENCFF088WXE H3K27ac    Data format 
     ENCFF135YDC_H3K27me3  ENCFF135YDC H3K27me3    Data format 
     ENCFF190AUQ_DNase-seq  ENCFF190AUQ DNase-seq    Data format 
     ENCFF217VXB_H3K4me1  ENCFF217VXB H3K4me1    Data format 
     ENCFF225HWG_polyA_plus_RNA-seq  ENCFF225HWG polyA_plus_RNA-seq    Data format 
     ENCFF227DEE_polyA_plus_RNA-seq  ENCFF227DEE polyA_plus_RNA-seq    Data format 
     ENCFF228NSX_polyA_plus_RNA-seq  ENCFF228NSX polyA_plus_RNA-seq    Data format 
     ENCFF315GLX_H3K4me3  ENCFF315GLX H3K4me3    Data format 
     ENCFF320DHO_H3K9me3  ENCFF320DHO H3K9me3    Data format 
     ENCFF324WLN_polyA_plus_RNA-seq  ENCFF324WLN polyA_plus_RNA-seq    Data format 
     ENCFF338CIA_DNase-seq  ENCFF338CIA DNase-seq    Data format 
     ENCFF373HPL_polyA_plus_RNA-seq  ENCFF373HPL polyA_plus_RNA-seq    Data format 
     ENCFF381JBK_H3K4me3  ENCFF381JBK H3K4me3    Data format 
     ENCFF384MJM_H3K9me3  ENCFF384MJM H3K9me3    Data format 
     ENCFF406GUT_DNase-seq  ENCFF406GUT DNase-seq    Data format 
     ENCFF427HNU_polyA_plus_RNA-seq  ENCFF427HNU polyA_plus_RNA-seq    Data format 
     ENCFF462VMI_polyA_plus_RNA-seq  ENCFF462VMI polyA_plus_RNA-seq    Data format 
     ENCFF487ZKP_H3K36me3  ENCFF487ZKP H3K36me3    Data format 
     ENCFF489CMK_polyA_plus_RNA-seq  ENCFF489CMK polyA_plus_RNA-seq    Data format 
     ENCFF497RJT_polyA_plus_RNA-seq  ENCFF497RJT polyA_plus_RNA-seq    Data format 
     ENCFF505WMS_polyA_plus_RNA-seq  ENCFF505WMS polyA_plus_RNA-seq    Data format 
     ENCFF507ZSM_H3K27me3  ENCFF507ZSM H3K27me3    Data format 
     ENCFF519ESI_DNase-seq  ENCFF519ESI DNase-seq    Data format 
     ENCFF587KMI_H3K27ac  ENCFF587KMI H3K27ac    Data format 
     ENCFF618JDV_H3K36me3  ENCFF618JDV H3K36me3    Data format 
     ENCFF732VPS_H3K4me1  ENCFF732VPS H3K4me1    Data format 
     ENCFF751PQP_polyA_plus_RNA-seq  ENCFF751PQP polyA_plus_RNA-seq    Data format 
     ENCFF753LZJ_polyA_plus_RNA-seq  ENCFF753LZJ polyA_plus_RNA-seq    Data format 
     ENCFF770KJO_H3K4me1  ENCFF770KJO H3K4me1    Data format 
     ENCFF785MXF_H3K4me3  ENCFF785MXF H3K4me3    Data format 
     ENCFF793QKN_H3K27ac  ENCFF793QKN H3K27ac    Data format 
     ENCFF803KOM_H3K4me1  ENCFF803KOM H3K4me1    Data format 
     ENCFF828IUK_H3K36me3  ENCFF828IUK H3K36me3    Data format 
     ENCFF832QFE_H3K27me3  ENCFF832QFE H3K27me3    Data format 
     ENCFF920TVY_H3K9me3  ENCFF920TVY H3K9me3    Data format 
     ENCFF942ORX_H3K4me3  ENCFF942ORX H3K4me3    Data format 
     ENCFF964FKW_H3K27me3  ENCFF964FKW H3K27me3    Data format 
     ENCFF965XEN_H3K9me3  ENCFF965XEN H3K9me3    Data format 
     ENCFF977SPD_H3K36me3  ENCFF977SPD H3K36me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:neutrophil
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF