Sample Summary pancreas Summary Track Settings
 
Roadmap Epigenome pancreas Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF011ZNA_H3K36me3  ENCFF011ZNA H3K36me3    Data format 
     ENCFF036WJV_H3K4me3  ENCFF036WJV H3K4me3    Data format 
     ENCFF047CXK_H3K27ac  ENCFF047CXK H3K27ac    Data format 
     ENCFF064QRH_polyA_plus_RNA-seq  ENCFF064QRH polyA_plus_RNA-seq    Data format 
     ENCFF082BVB_H3K4me1  ENCFF082BVB H3K4me1    Data format 
     ENCFF091AGW_polyA_plus_RNA-seq  ENCFF091AGW polyA_plus_RNA-seq    Data format 
     ENCFF105FBZ_polyA_plus_RNA-seq  ENCFF105FBZ polyA_plus_RNA-seq    Data format 
     ENCFF108OVY_WGBS  ENCFF108OVY WGBS    Data format 
     ENCFF127WTT_H3K4me3  ENCFF127WTT H3K4me3    Data format 
     ENCFF158QOY_DNase-seq  ENCFF158QOY DNase-seq    Data format 
     ENCFF162KYF_polyA_plus_RNA-seq  ENCFF162KYF polyA_plus_RNA-seq    Data format 
     ENCFF174QFD_H3K4me1  ENCFF174QFD H3K4me1    Data format 
     ENCFF174VRX_H3K4me3  ENCFF174VRX H3K4me3    Data format 
     ENCFF186QBQ_H3K27me3  ENCFF186QBQ H3K27me3    Data format 
     ENCFF213TBE_H3K4me3  ENCFF213TBE H3K4me3    Data format 
     ENCFF220WOL_H3K27me3  ENCFF220WOL H3K27me3    Data format 
     ENCFF230OUF_DNase-seq  ENCFF230OUF DNase-seq    Data format 
     ENCFF236UDF_H3K27me3  ENCFF236UDF H3K27me3    Data format 
     ENCFF244LXR_H3K9me3  ENCFF244LXR H3K9me3    Data format 
     ENCFF254ENM_H3K27me3  ENCFF254ENM H3K27me3    Data format 
     ENCFF263MZD_H3K36me3  ENCFF263MZD H3K36me3    Data format 
     ENCFF276PMF_polyA_plus_RNA-seq  ENCFF276PMF polyA_plus_RNA-seq    Data format 
     ENCFF281HQH_H3K4me1  ENCFF281HQH H3K4me1    Data format 
     ENCFF317PKP_H3K4me3  ENCFF317PKP H3K4me3    Data format 
     ENCFF324FSY_H3K27me3  ENCFF324FSY H3K27me3    Data format 
     ENCFF327GAQ_H3K9me3  ENCFF327GAQ H3K9me3    Data format 
     ENCFF334OLN_H3K9me3  ENCFF334OLN H3K9me3    Data format 
     ENCFF342YVM_H3K27ac  ENCFF342YVM H3K27ac    Data format 
     ENCFF345NSW_DNase-seq  ENCFF345NSW DNase-seq    Data format 
     ENCFF356LDB_H3K4me1  ENCFF356LDB H3K4me1    Data format 
     ENCFF358KVL_H3K36me3  ENCFF358KVL H3K36me3    Data format 
     ENCFF360JKJ_H3K4me1  ENCFF360JKJ H3K4me1    Data format 
     ENCFF367ANS_H3K27me3  ENCFF367ANS H3K27me3    Data format 
     ENCFF382AWG_H3K27ac  ENCFF382AWG H3K27ac    Data format 
     ENCFF394RFS_H3K27ac  ENCFF394RFS H3K27ac    Data format 
     ENCFF401BRA_H3K36me3  ENCFF401BRA H3K36me3    Data format 
     ENCFF415CSD_polyA_plus_RNA-seq  ENCFF415CSD polyA_plus_RNA-seq    Data format 
     ENCFF418JEV_H3K27me3  ENCFF418JEV H3K27me3    Data format 
     ENCFF459FAM_DNase-seq  ENCFF459FAM DNase-seq    Data format 
     ENCFF463JIN_H3K36me3  ENCFF463JIN H3K36me3    Data format 
     ENCFF484MHT_polyA_plus_RNA-seq  ENCFF484MHT polyA_plus_RNA-seq    Data format 
     ENCFF492DCJ_H3K9me3  ENCFF492DCJ H3K9me3    Data format 
     ENCFF494ZIO_H3K4me3  ENCFF494ZIO H3K4me3    Data format 
     ENCFF505ULB_H3K36me3  ENCFF505ULB H3K36me3    Data format 
     ENCFF542WHC_H3K9me3  ENCFF542WHC H3K9me3    Data format 
     ENCFF559NXP_H3K36me3  ENCFF559NXP H3K36me3    Data format 
     ENCFF597VCD_H3K4me1  ENCFF597VCD H3K4me1    Data format 
     ENCFF607BZM_H3K4me3  ENCFF607BZM H3K4me3    Data format 
     ENCFF629QHY_H3K4me1  ENCFF629QHY H3K4me1    Data format 
     ENCFF641QSU_H3K27ac  ENCFF641QSU H3K27ac    Data format 
     ENCFF675ZFB_polyA_plus_RNA-seq  ENCFF675ZFB polyA_plus_RNA-seq    Data format 
     ENCFF695ERR_H3K9me3  ENCFF695ERR H3K9me3    Data format 
     ENCFF699OTK_polyA_plus_RNA-seq  ENCFF699OTK polyA_plus_RNA-seq    Data format 
     ENCFF722VPA_H3K9me3  ENCFF722VPA H3K9me3    Data format 
     ENCFF726MUV_H3K27me3  ENCFF726MUV H3K27me3    Data format 
     ENCFF765MYA_polyA_plus_RNA-seq  ENCFF765MYA polyA_plus_RNA-seq    Data format 
     ENCFF850FLB_H3K9me3  ENCFF850FLB H3K9me3    Data format 
     ENCFF886QUZ_polyA_plus_RNA-seq  ENCFF886QUZ polyA_plus_RNA-seq    Data format 
     ENCFF907EJV_H3K27ac  ENCFF907EJV H3K27ac    Data format 
     ENCFF908MQD_H3K27ac  ENCFF908MQD H3K27ac    Data format 
     ENCFF913NVD_H3K27ac  ENCFF913NVD H3K27ac    Data format 
     ENCFF942UQE_H3K4me3  ENCFF942UQE H3K4me3    Data format 
     ENCFF958JAK_H3K4me1  ENCFF958JAK H3K4me1    Data format 
     ENCFF976BXP_polyA_plus_RNA-seq  ENCFF976BXP polyA_plus_RNA-seq    Data format 
     ENCFF990LTW_H3K36me3  ENCFF990LTW H3K36me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:ovary
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF