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Roadmap Epigenome placenta Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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All subtracks:
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     ENCFF011VZA_H3K36me3  ENCFF011VZA H3K36me3    Data format 
     ENCFF021HSZ_H3K9me3  ENCFF021HSZ H3K9me3    Data format 
     ENCFF064PQE_H3K9me3  ENCFF064PQE H3K9me3    Data format 
     ENCFF075SXI_H3K27ac  ENCFF075SXI H3K27ac    Data format 
     ENCFF088IXP_H3K9me3  ENCFF088IXP H3K9me3    Data format 
     ENCFF099OAY_H3K27ac  ENCFF099OAY H3K27ac    Data format 
     ENCFF101VWR_H3K4me1  ENCFF101VWR H3K4me1    Data format 
     ENCFF107LVE_polyA_plus_RNA-seq  ENCFF107LVE polyA_plus_RNA-seq    Data format 
     ENCFF111SZU_H3K4me3  ENCFF111SZU H3K4me3    Data format 
     ENCFF114UNV_microRNA-seq  ENCFF114UNV microRNA-seq    Data format 
     ENCFF120CVA_H3K4me3  ENCFF120CVA H3K4me3    Data format 
     ENCFF120THB_H3K36me3  ENCFF120THB H3K36me3    Data format 
     ENCFF126HOZ_H3K4me1  ENCFF126HOZ H3K4me1    Data format 
     ENCFF138GPB_H3K4me3  ENCFF138GPB H3K4me3    Data format 
     ENCFF138GVP_H3K4me1  ENCFF138GVP H3K4me1    Data format 
     ENCFF139WBP_H3K27me3  ENCFF139WBP H3K27me3    Data format 
     ENCFF142AFQ_H3K27ac  ENCFF142AFQ H3K27ac    Data format 
     ENCFF158FNU_H3K27me3  ENCFF158FNU H3K27me3    Data format 
     ENCFF171FLK_H3K36me3  ENCFF171FLK H3K36me3    Data format 
     ENCFF176WVA_DNase-seq  ENCFF176WVA DNase-seq    Data format 
     ENCFF180IFD_DNase-seq  ENCFF180IFD DNase-seq    Data format 
     ENCFF193DUP_H3K27ac  ENCFF193DUP H3K27ac    Data format 
     ENCFF197KYO_DNase-seq  ENCFF197KYO DNase-seq    Data format 
     ENCFF203WIC_microRNA-seq  ENCFF203WIC microRNA-seq    Data format 
     ENCFF217EWG_H3K27ac  ENCFF217EWG H3K27ac    Data format 
     ENCFF227FWU_H3K9me3  ENCFF227FWU H3K9me3    Data format 
     ENCFF239XBH_H3K4me1  ENCFF239XBH H3K4me1    Data format 
     ENCFF250LHS_H3K36me3  ENCFF250LHS H3K36me3    Data format 
     ENCFF259GQW_H3K27me3  ENCFF259GQW H3K27me3    Data format 
     ENCFF297HLF_DNase-seq  ENCFF297HLF DNase-seq    Data format 
     ENCFF352YAF_polyA_plus_RNA-seq  ENCFF352YAF polyA_plus_RNA-seq    Data format 
     ENCFF353YRU_H3K36me3  ENCFF353YRU H3K36me3    Data format 
     ENCFF359CVV_polyA_plus_RNA-seq  ENCFF359CVV polyA_plus_RNA-seq    Data format 
     ENCFF362VKM_microRNA-seq  ENCFF362VKM microRNA-seq    Data format 
     ENCFF364KWK_H3K4me1  ENCFF364KWK H3K4me1    Data format 
     ENCFF374VXQ_H3K4me3  ENCFF374VXQ H3K4me3    Data format 
     ENCFF383SIU_DNase-seq  ENCFF383SIU DNase-seq    Data format 
     ENCFF388LZX_H3K4me3  ENCFF388LZX H3K4me3    Data format 
     ENCFF395IKE_H3K27me3  ENCFF395IKE H3K27me3    Data format 
     ENCFF404ADS_H3K9me3  ENCFF404ADS H3K9me3    Data format 
     ENCFF410MAJ_H3K27me3  ENCFF410MAJ H3K27me3    Data format 
     ENCFF424VVO_H3K27me3  ENCFF424VVO H3K27me3    Data format 
     ENCFF436GJG_DNase-seq  ENCFF436GJG DNase-seq    Data format 
     ENCFF457ORY_H3K4me1  ENCFF457ORY H3K4me1    Data format 
     ENCFF468HHO_H3K27ac  ENCFF468HHO H3K27ac    Data format 
     ENCFF471IFY_DNase-seq  ENCFF471IFY DNase-seq    Data format 
     ENCFF494VPD_H3K9me3  ENCFF494VPD H3K9me3    Data format 
     ENCFF499YFG_H3K36me3  ENCFF499YFG H3K36me3    Data format 
     ENCFF511ZZY_H3K4me3  ENCFF511ZZY H3K4me3    Data format 
     ENCFF513LGT_H3K4me1  ENCFF513LGT H3K4me1    Data format 
     ENCFF519APC_microRNA-seq  ENCFF519APC microRNA-seq    Data format 
     ENCFF522EVU_H3K27me3  ENCFF522EVU H3K27me3    Data format 
     ENCFF547MCY_H3K9me3  ENCFF547MCY H3K9me3    Data format 
     ENCFF558MZX_H3K36me3  ENCFF558MZX H3K36me3    Data format 
     ENCFF575CKN_DNase-seq  ENCFF575CKN DNase-seq    Data format 
     ENCFF589XHC_microRNA-seq  ENCFF589XHC microRNA-seq    Data format 
     ENCFF634SBS_H3K27me3  ENCFF634SBS H3K27me3    Data format 
     ENCFF648LNX_H3K4me3  ENCFF648LNX H3K4me3    Data format 
     ENCFF650AVH_H3K27ac  ENCFF650AVH H3K27ac    Data format 
     ENCFF670NRW_H3K4me3  ENCFF670NRW H3K4me3    Data format 
     ENCFF676UZG_H3K4me1  ENCFF676UZG H3K4me1    Data format 
     ENCFF681MHT_DNase-seq  ENCFF681MHT DNase-seq    Data format 
     ENCFF689XXW_H3K27ac  ENCFF689XXW H3K27ac    Data format 
     ENCFF708YOQ_H3K4me1  ENCFF708YOQ H3K4me1    Data format 
     ENCFF712NJH_microRNA-seq  ENCFF712NJH microRNA-seq    Data format 
     ENCFF714BDC_H3K27me3  ENCFF714BDC H3K27me3    Data format 
     ENCFF719BSU_polyA_plus_RNA-seq  ENCFF719BSU polyA_plus_RNA-seq    Data format 
     ENCFF723VDI_H3K36me3  ENCFF723VDI H3K36me3    Data format 
     ENCFF734KIL_microRNA-seq  ENCFF734KIL microRNA-seq    Data format 
     ENCFF754TFK_H3K9me3  ENCFF754TFK H3K9me3    Data format 
     ENCFF759QZV_H3K4me1  ENCFF759QZV H3K4me1    Data format 
     ENCFF759XYQ_H3K36me3  ENCFF759XYQ H3K36me3    Data format 
     ENCFF764MAT_H3K9me3  ENCFF764MAT H3K9me3    Data format 
     ENCFF772SIL_H3K4me3  ENCFF772SIL H3K4me3    Data format 
     ENCFF804AOO_DNase-seq  ENCFF804AOO DNase-seq    Data format 
     ENCFF808BCW_H3K36me3  ENCFF808BCW H3K36me3    Data format 
     ENCFF815RQG_microRNA-seq  ENCFF815RQG microRNA-seq    Data format 
     ENCFF817OYZ_H3K36me3  ENCFF817OYZ H3K36me3    Data format 
     ENCFF823ISG_H3K9me3  ENCFF823ISG H3K9me3    Data format 
     ENCFF827REY_H3K9me3  ENCFF827REY H3K9me3    Data format 
     ENCFF840BJK_microRNA-seq  ENCFF840BJK microRNA-seq    Data format 
     ENCFF840GHF_microRNA-seq  ENCFF840GHF microRNA-seq    Data format 
     ENCFF843CZS_H3K27ac  ENCFF843CZS H3K27ac    Data format 
     ENCFF843SWO_H3K4me1  ENCFF843SWO H3K4me1    Data format 
     ENCFF848HAN_H3K27me3  ENCFF848HAN H3K27me3    Data format 
     ENCFF875ODM_H3K4me1  ENCFF875ODM H3K4me1    Data format 
     ENCFF888PXY_H3K27ac  ENCFF888PXY H3K27ac    Data format 
     ENCFF890SIF_H3K27ac  ENCFF890SIF H3K27ac    Data format 
     ENCFF916TSW_microRNA-seq  ENCFF916TSW microRNA-seq    Data format 
     ENCFF918MXM_H3K27me3  ENCFF918MXM H3K27me3    Data format 
     ENCFF928RQF_H3K27ac  ENCFF928RQF H3K27ac    Data format 
     ENCFF937IHO_H3K9me3  ENCFF937IHO H3K9me3    Data format 
     ENCFF941FOA_microRNA-seq  ENCFF941FOA microRNA-seq    Data format 
     ENCFF945YPN_H3K4me3  ENCFF945YPN H3K4me3    Data format 
     ENCFF954NRC_H3K4me3  ENCFF954NRC H3K4me3    Data format 
     ENCFF954ZUR_DNase-seq  ENCFF954ZUR DNase-seq    Data format 
     ENCFF977EAU_H3K4me3  ENCFF977EAU H3K4me3    Data format 
     ENCFF987HVM_DNase-seq  ENCFF987HVM DNase-seq    Data format 
     ENCFF989EAC_H3K27me3  ENCFF989EAC H3K27me3    Data format 
     ENCFF999HRT_H3K36me3  ENCFF999HRT H3K36me3    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:plus_strand_signal_of_all_reads
Sample:peripheral_blood_mononuclear_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF