Sample Summary psoas_muscle Summary Track Settings
 
Roadmap Epigenome psoas_muscle Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF004WEH_H3K4me3  ENCFF004WEH H3K4me3    Data format 
     ENCFF016GPR_H3K27ac  ENCFF016GPR H3K27ac    Data format 
     ENCFF024VLY_H3K4me3  ENCFF024VLY H3K4me3    Data format 
     ENCFF027OOG_polyA_plus_RNA-seq  ENCFF027OOG polyA_plus_RNA-seq    Data format 
     ENCFF032RHD_H3K27ac  ENCFF032RHD H3K27ac    Data format 
     ENCFF085EWM_H3K4me3  ENCFF085EWM H3K4me3    Data format 
     ENCFF086CKE_polyA_plus_RNA-seq  ENCFF086CKE polyA_plus_RNA-seq    Data format 
     ENCFF088CPA_H3K27ac  ENCFF088CPA H3K27ac    Data format 
     ENCFF094SOM_polyA_plus_RNA-seq  ENCFF094SOM polyA_plus_RNA-seq    Data format 
     ENCFF128TVE_H3K36me3  ENCFF128TVE H3K36me3    Data format 
     ENCFF170NNF_H3K4me3  ENCFF170NNF H3K4me3    Data format 
     ENCFF172AJV_DNase-seq  ENCFF172AJV DNase-seq    Data format 
     ENCFF179EUX_H3K4me1  ENCFF179EUX H3K4me1    Data format 
     ENCFF184XXA_H3K27ac  ENCFF184XXA H3K27ac    Data format 
     ENCFF195YSC_H3K4me1  ENCFF195YSC H3K4me1    Data format 
     ENCFF238VMR_WGBS  ENCFF238VMR WGBS    Data format 
     ENCFF241XMS_DNase-seq  ENCFF241XMS DNase-seq    Data format 
     ENCFF274XBI_H3K9me3  ENCFF274XBI H3K9me3    Data format 
     ENCFF299GOF_polyA_plus_RNA-seq  ENCFF299GOF polyA_plus_RNA-seq    Data format 
     ENCFF306AMD_H3K27me3  ENCFF306AMD H3K27me3    Data format 
     ENCFF327JUC_polyA_plus_RNA-seq  ENCFF327JUC polyA_plus_RNA-seq    Data format 
     ENCFF336QAJ_H3K4me1  ENCFF336QAJ H3K4me1    Data format 
     ENCFF360XRH_polyA_plus_RNA-seq  ENCFF360XRH polyA_plus_RNA-seq    Data format 
     ENCFF375TCU_H3K9me3  ENCFF375TCU H3K9me3    Data format 
     ENCFF375UAV_H3K27ac  ENCFF375UAV H3K27ac    Data format 
     ENCFF376LTX_H3K27ac  ENCFF376LTX H3K27ac    Data format 
     ENCFF399JJJ_polyA_plus_RNA-seq  ENCFF399JJJ polyA_plus_RNA-seq    Data format 
     ENCFF406PPG_H3K27ac  ENCFF406PPG H3K27ac    Data format 
     ENCFF407IAZ_H3K4me1  ENCFF407IAZ H3K4me1    Data format 
     ENCFF415FHR_H3K4me3  ENCFF415FHR H3K4me3    Data format 
     ENCFF428TKZ_H3K27me3  ENCFF428TKZ H3K27me3    Data format 
     ENCFF438WLP_H3K27me3  ENCFF438WLP H3K27me3    Data format 
     ENCFF520CVN_H3K4me3  ENCFF520CVN H3K4me3    Data format 
     ENCFF526EBO_H3K4me1  ENCFF526EBO H3K4me1    Data format 
     ENCFF533PTN_H3K27me3  ENCFF533PTN H3K27me3    Data format 
     ENCFF547VUU_polyA_plus_RNA-seq  ENCFF547VUU polyA_plus_RNA-seq    Data format 
     ENCFF584CKL_H3K27ac  ENCFF584CKL H3K27ac    Data format 
     ENCFF588ATR_H3K36me3  ENCFF588ATR H3K36me3    Data format 
     ENCFF612GNV_H3K27ac  ENCFF612GNV H3K27ac    Data format 
     ENCFF619HYF_H3K4me3  ENCFF619HYF H3K4me3    Data format 
     ENCFF631XWC_polyA_plus_RNA-seq  ENCFF631XWC polyA_plus_RNA-seq    Data format 
     ENCFF634WYL_polyA_plus_RNA-seq  ENCFF634WYL polyA_plus_RNA-seq    Data format 
     ENCFF639BRW_H3K4me3  ENCFF639BRW H3K4me3    Data format 
     ENCFF654BXW_polyA_plus_RNA-seq  ENCFF654BXW polyA_plus_RNA-seq    Data format 
     ENCFF673QAP_H3K4me1  ENCFF673QAP H3K4me1    Data format 
     ENCFF691SGO_H3K4me1  ENCFF691SGO H3K4me1    Data format 
     ENCFF694UBW_H3K27ac  ENCFF694UBW H3K27ac    Data format 
     ENCFF695BAL_polyA_plus_RNA-seq  ENCFF695BAL polyA_plus_RNA-seq    Data format 
     ENCFF711RSC_polyA_plus_RNA-seq  ENCFF711RSC polyA_plus_RNA-seq    Data format 
     ENCFF713BLF_H3K27ac  ENCFF713BLF H3K27ac    Data format 
     ENCFF726FMS_H3K27me3  ENCFF726FMS H3K27me3    Data format 
     ENCFF729MSR_H3K9me3  ENCFF729MSR H3K9me3    Data format 
     ENCFF785TRJ_polyA_plus_RNA-seq  ENCFF785TRJ polyA_plus_RNA-seq    Data format 
     ENCFF804DFG_H3K36me3  ENCFF804DFG H3K36me3    Data format 
     ENCFF831GPR_polyA_plus_RNA-seq  ENCFF831GPR polyA_plus_RNA-seq    Data format 
     ENCFF859HEK_polyA_plus_RNA-seq  ENCFF859HEK polyA_plus_RNA-seq    Data format 
     ENCFF869ZMK_H3K4me1  ENCFF869ZMK H3K4me1    Data format 
     ENCFF890MAI_H3K9me3  ENCFF890MAI H3K9me3    Data format 
     ENCFF912BEJ_H3K27ac  ENCFF912BEJ H3K27ac    Data format 
     ENCFF919VTU_H3K36me3  ENCFF919VTU H3K36me3    Data format 
     ENCFF935RPR_H3K27me3  ENCFF935RPR H3K27me3    Data format 
     ENCFF941DTW_H3K27me3  ENCFF941DTW H3K27me3    Data format 
     ENCFF988YFJ_H3K27me3  ENCFF988YFJ H3K27me3    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:plus_strand_signal_of_unique_reads
Sample:placental_basal_plate
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF