Sample Summary regulatory_T_cell Summary Track Settings
 
Roadmap Epigenome regulatory_T_cell Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF076GVX_H3K9me3  ENCFF076GVX H3K9me3    Data format 
     ENCFF159UNP_H3K36me3  ENCFF159UNP H3K36me3    Data format 
     ENCFF250RDO_H3K27me3  ENCFF250RDO H3K27me3    Data format 
     ENCFF254ZAE_H3K27me3  ENCFF254ZAE H3K27me3    Data format 
     ENCFF337OCV_H3K36me3  ENCFF337OCV H3K36me3    Data format 
     ENCFF385BPH_H3K4me3  ENCFF385BPH H3K4me3    Data format 
     ENCFF516NRP_H3K9me3  ENCFF516NRP H3K9me3    Data format 
     ENCFF564MDP_H3K27me3  ENCFF564MDP H3K27me3    Data format 
     ENCFF679TRB_H3K27me3  ENCFF679TRB H3K27me3    Data format 
     ENCFF706HRP_H3K4me3  ENCFF706HRP H3K4me3    Data format 
     ENCFF709FUJ_H3K4me3  ENCFF709FUJ H3K4me3    Data format 
     ENCFF774YSJ_H3K9me3  ENCFF774YSJ H3K9me3    Data format 
     ENCFF814OIQ_H3K36me3  ENCFF814OIQ H3K36me3    Data format 
     ENCFF893YKF_H3K36me3  ENCFF893YKF H3K36me3    Data format 
     ENCFF913NYR_H3K4me3  ENCFF913NYR H3K4me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:rectal_smooth_muscle_tissue
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF