Sample Summary renal_pelvis Summary Track Settings
 
Roadmap Epigenome renal_pelvis Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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     ENCFF010FIA_DNase-seq  ENCFF010FIA DNase-seq    Data format 
     ENCFF069WLL_DNase-seq  ENCFF069WLL DNase-seq    Data format 
     ENCFF078RPO_DNase-seq  ENCFF078RPO DNase-seq    Data format 
     ENCFF084KCK_polyA_plus_RNA-seq  ENCFF084KCK polyA_plus_RNA-seq    Data format 
     ENCFF103XFN_DNase-seq  ENCFF103XFN DNase-seq    Data format 
     ENCFF110IDL_polyA_plus_RNA-seq  ENCFF110IDL polyA_plus_RNA-seq    Data format 
     ENCFF111IXV_polyA_plus_RNA-seq  ENCFF111IXV polyA_plus_RNA-seq    Data format 
     ENCFF159MCJ_DNase-seq  ENCFF159MCJ DNase-seq    Data format 
     ENCFF161NZJ_DNase-seq  ENCFF161NZJ DNase-seq    Data format 
     ENCFF319GAX_DNase-seq  ENCFF319GAX DNase-seq    Data format 
     ENCFF336DAH_polyA_plus_RNA-seq  ENCFF336DAH polyA_plus_RNA-seq    Data format 
     ENCFF355BPJ_DNase-seq  ENCFF355BPJ DNase-seq    Data format 
     ENCFF381ZJI_polyA_plus_RNA-seq  ENCFF381ZJI polyA_plus_RNA-seq    Data format 
     ENCFF387JED_DNase-seq  ENCFF387JED DNase-seq    Data format 
     ENCFF391XHF_polyA_plus_RNA-seq  ENCFF391XHF polyA_plus_RNA-seq    Data format 
     ENCFF407LCA_DNase-seq  ENCFF407LCA DNase-seq    Data format 
     ENCFF579YPB_polyA_plus_RNA-seq  ENCFF579YPB polyA_plus_RNA-seq    Data format 
     ENCFF581WFW_DNase-seq  ENCFF581WFW DNase-seq    Data format 
     ENCFF643GKF_DNase-seq  ENCFF643GKF DNase-seq    Data format 
     ENCFF672MMS_DNase-seq  ENCFF672MMS DNase-seq    Data format 
     ENCFF674AFY_DNase-seq  ENCFF674AFY DNase-seq    Data format 
     ENCFF688DWT_DNase-seq  ENCFF688DWT DNase-seq    Data format 
     ENCFF688MII_polyA_plus_RNA-seq  ENCFF688MII polyA_plus_RNA-seq    Data format 
     ENCFF693TJD_polyA_plus_RNA-seq  ENCFF693TJD polyA_plus_RNA-seq    Data format 
     ENCFF705DDM_DNase-seq  ENCFF705DDM DNase-seq    Data format 
     ENCFF734APY_DNase-seq  ENCFF734APY DNase-seq    Data format 
     ENCFF737RYT_polyA_plus_RNA-seq  ENCFF737RYT polyA_plus_RNA-seq    Data format 
     ENCFF776HKW_polyA_plus_RNA-seq  ENCFF776HKW polyA_plus_RNA-seq    Data format 
     ENCFF884QVN_DNase-seq  ENCFF884QVN DNase-seq    Data format 
     ENCFF951RTD_DNase-seq  ENCFF951RTD DNase-seq    Data format 
     ENCFF964WUW_DNase-seq  ENCFF964WUW DNase-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:signal_of_unique_reads
Sample:renal_cortex_interstitium
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF