Sample Summary right_cardiac_atrium Summary Track Settings
 
Roadmap Epigenome right_cardiac_atrium Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF050UUL_polyA_plus_RNA-seq  ENCFF050UUL polyA_plus_RNA-seq    Data format 
     ENCFF086XDS_H3K9me3  ENCFF086XDS H3K9me3    Data format 
     ENCFF124MGU_H3K9me3  ENCFF124MGU H3K9me3    Data format 
     ENCFF134YRC_H3K4me3  ENCFF134YRC H3K4me3    Data format 
     ENCFF183YIX_polyA_plus_RNA-seq  ENCFF183YIX polyA_plus_RNA-seq    Data format 
     ENCFF278YAD_H3K27me3  ENCFF278YAD H3K27me3    Data format 
     ENCFF297LKI_H3K27me3  ENCFF297LKI H3K27me3    Data format 
     ENCFF388FRI_H3K4me3  ENCFF388FRI H3K4me3    Data format 
     ENCFF396OMW_polyA_plus_RNA-seq  ENCFF396OMW polyA_plus_RNA-seq    Data format 
     ENCFF397DBP_polyA_plus_RNA-seq  ENCFF397DBP polyA_plus_RNA-seq    Data format 
     ENCFF432LLZ_H3K9me3  ENCFF432LLZ H3K9me3    Data format 
     ENCFF456NOT_H3K27ac  ENCFF456NOT H3K27ac    Data format 
     ENCFF488SDA_H3K4me1  ENCFF488SDA H3K4me1    Data format 
     ENCFF514UAT_polyA_plus_RNA-seq  ENCFF514UAT polyA_plus_RNA-seq    Data format 
     ENCFF551TKQ_polyA_plus_RNA-seq  ENCFF551TKQ polyA_plus_RNA-seq    Data format 
     ENCFF594ZSC_H3K27me3  ENCFF594ZSC H3K27me3    Data format 
     ENCFF616SXP_H3K4me1  ENCFF616SXP H3K4me1    Data format 
     ENCFF621KKH_H3K9me3  ENCFF621KKH H3K9me3    Data format 
     ENCFF627YMJ_polyA_plus_RNA-seq  ENCFF627YMJ polyA_plus_RNA-seq    Data format 
     ENCFF643ZAD_polyA_plus_RNA-seq  ENCFF643ZAD polyA_plus_RNA-seq    Data format 
     ENCFF722IPW_H3K4me3  ENCFF722IPW H3K4me3    Data format 
     ENCFF776IPC_H3K4me1  ENCFF776IPC H3K4me1    Data format 
     ENCFF806TCT_H3K27me3  ENCFF806TCT H3K27me3    Data format 
     ENCFF893SET_H3K27ac  ENCFF893SET H3K27ac    Data format 
     ENCFF922PBC_H3K4me1  ENCFF922PBC H3K4me1    Data format 
     ENCFF958IXF_H3K4me3  ENCFF958IXF H3K4me3    Data format 
     ENCFF980FUE_H3K27ac  ENCFF980FUE H3K27ac    Data format 
     ENCFF983HIO_H3K27ac  ENCFF983HIO H3K27ac    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:regulatory_T_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF