Sample Summary right_lung Summary Track Settings
 
Roadmap Epigenome right_lung Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF020TSN_polyA_plus_RNA-seq  ENCFF020TSN polyA_plus_RNA-seq    Data format 
     ENCFF030GLD_DNase-seq  ENCFF030GLD DNase-seq    Data format 
     ENCFF071LJS_DNase-seq  ENCFF071LJS DNase-seq    Data format 
     ENCFF088ADB_polyA_plus_RNA-seq  ENCFF088ADB polyA_plus_RNA-seq    Data format 
     ENCFF242TEW_DNase-seq  ENCFF242TEW DNase-seq    Data format 
     ENCFF328QBG_polyA_plus_RNA-seq  ENCFF328QBG polyA_plus_RNA-seq    Data format 
     ENCFF330KCN_DNase-seq  ENCFF330KCN DNase-seq    Data format 
     ENCFF338GCP_DNase-seq  ENCFF338GCP DNase-seq    Data format 
     ENCFF376RGV_polyA_plus_RNA-seq  ENCFF376RGV polyA_plus_RNA-seq    Data format 
     ENCFF432CYV_polyA_plus_RNA-seq  ENCFF432CYV polyA_plus_RNA-seq    Data format 
     ENCFF442CIF_polyA_plus_RNA-seq  ENCFF442CIF polyA_plus_RNA-seq    Data format 
     ENCFF477QMX_DNase-seq  ENCFF477QMX DNase-seq    Data format 
     ENCFF488KNY_polyA_plus_RNA-seq  ENCFF488KNY polyA_plus_RNA-seq    Data format 
     ENCFF491HNC_DNase-seq  ENCFF491HNC DNase-seq    Data format 
     ENCFF499TWX_DNase-seq  ENCFF499TWX DNase-seq    Data format 
     ENCFF520PUY_DNase-seq  ENCFF520PUY DNase-seq    Data format 
     ENCFF520RDT_DNase-seq  ENCFF520RDT DNase-seq    Data format 
     ENCFF543JQI_DNase-seq  ENCFF543JQI DNase-seq    Data format 
     ENCFF544RMH_polyA_plus_RNA-seq  ENCFF544RMH polyA_plus_RNA-seq    Data format 
     ENCFF549GUM_polyA_plus_RNA-seq  ENCFF549GUM polyA_plus_RNA-seq    Data format 
     ENCFF559JUU_polyA_plus_RNA-seq  ENCFF559JUU polyA_plus_RNA-seq    Data format 
     ENCFF586GLK_DNase-seq  ENCFF586GLK DNase-seq    Data format 
     ENCFF598PHG_polyA_plus_RNA-seq  ENCFF598PHG polyA_plus_RNA-seq    Data format 
     ENCFF616OZU_polyA_plus_RNA-seq  ENCFF616OZU polyA_plus_RNA-seq    Data format 
     ENCFF621MQK_DNase-seq  ENCFF621MQK DNase-seq    Data format 
     ENCFF624TRS_polyA_plus_RNA-seq  ENCFF624TRS polyA_plus_RNA-seq    Data format 
     ENCFF631ZXV_DNase-seq  ENCFF631ZXV DNase-seq    Data format 
     ENCFF640UAZ_DNase-seq  ENCFF640UAZ DNase-seq    Data format 
     ENCFF674YCS_DNase-seq  ENCFF674YCS DNase-seq    Data format 
     ENCFF679ISW_polyA_plus_RNA-seq  ENCFF679ISW polyA_plus_RNA-seq    Data format 
     ENCFF728QZZ_polyA_plus_RNA-seq  ENCFF728QZZ polyA_plus_RNA-seq    Data format 
     ENCFF753QJC_DNase-seq  ENCFF753QJC DNase-seq    Data format 
     ENCFF784RSW_DNase-seq  ENCFF784RSW DNase-seq    Data format 
     ENCFF785AVA_DNase-seq  ENCFF785AVA DNase-seq    Data format 
     ENCFF789CEJ_polyA_plus_RNA-seq  ENCFF789CEJ polyA_plus_RNA-seq    Data format 
     ENCFF817FWU_polyA_plus_RNA-seq  ENCFF817FWU polyA_plus_RNA-seq    Data format 
     ENCFF834ZXG_polyA_plus_RNA-seq  ENCFF834ZXG polyA_plus_RNA-seq    Data format 
     ENCFF874TYZ_polyA_plus_RNA-seq  ENCFF874TYZ polyA_plus_RNA-seq    Data format 
     ENCFF880ULX_DNase-seq  ENCFF880ULX DNase-seq    Data format 
     ENCFF942LPA_DNase-seq  ENCFF942LPA DNase-seq    Data format 
     ENCFF962DKE_DNase-seq  ENCFF962DKE DNase-seq    Data format 
    
Metadata:
Assay:DNase-seq
OutputType:read-depth_normalized_signal
Sample:right_kidney
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF