Sample Summary right_renal_pelvis Summary Track Settings
 
Roadmap Epigenome right_renal_pelvis Summary

Track collection: Sample Summary

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     ENCFF046NXJ_polyA_plus_RNA-seq  ENCFF046NXJ polyA_plus_RNA-seq    Data format 
     ENCFF146DMX_polyA_plus_RNA-seq  ENCFF146DMX polyA_plus_RNA-seq    Data format 
     ENCFF260JAP_polyA_plus_RNA-seq  ENCFF260JAP polyA_plus_RNA-seq    Data format 
     ENCFF265OZB_polyA_plus_RNA-seq  ENCFF265OZB polyA_plus_RNA-seq    Data format 
     ENCFF316ZWI_DNase-seq  ENCFF316ZWI DNase-seq    Data format 
     ENCFF350LYC_polyA_plus_RNA-seq  ENCFF350LYC polyA_plus_RNA-seq    Data format 
     ENCFF391YLL_polyA_plus_RNA-seq  ENCFF391YLL polyA_plus_RNA-seq    Data format 
     ENCFF419QSU_polyA_plus_RNA-seq  ENCFF419QSU polyA_plus_RNA-seq    Data format 
     ENCFF456QHI_polyA_plus_RNA-seq  ENCFF456QHI polyA_plus_RNA-seq    Data format 
     ENCFF464EXL_polyA_plus_RNA-seq  ENCFF464EXL polyA_plus_RNA-seq    Data format 
     ENCFF543UPA_polyA_plus_RNA-seq  ENCFF543UPA polyA_plus_RNA-seq    Data format 
     ENCFF593JCS_polyA_plus_RNA-seq  ENCFF593JCS polyA_plus_RNA-seq    Data format 
     ENCFF630KCX_DNase-seq  ENCFF630KCX DNase-seq    Data format 
     ENCFF664OWE_DNase-seq  ENCFF664OWE DNase-seq    Data format 
     ENCFF678PNT_DNase-seq  ENCFF678PNT DNase-seq    Data format 
     ENCFF679YQA_polyA_plus_RNA-seq  ENCFF679YQA polyA_plus_RNA-seq    Data format 
     ENCFF683OMN_polyA_plus_RNA-seq  ENCFF683OMN polyA_plus_RNA-seq    Data format 
     ENCFF785TYR_DNase-seq  ENCFF785TYR DNase-seq    Data format 
     ENCFF796CXI_polyA_plus_RNA-seq  ENCFF796CXI polyA_plus_RNA-seq    Data format 
     ENCFF876MLB_polyA_plus_RNA-seq  ENCFF876MLB polyA_plus_RNA-seq    Data format 
     ENCFF881JSN_DNase-seq  ENCFF881JSN DNase-seq    Data format 
     ENCFF923TRG_DNase-seq  ENCFF923TRG DNase-seq    Data format 
     ENCFF924NHH_DNase-seq  ENCFF924NHH DNase-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:signal_of_all_reads
Sample:right_renal_cortex_interstitium
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF