Sample Summary sigmoid_colon Summary Track Settings
 
Roadmap Epigenome sigmoid_colon Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF007ZXP_H3K27ac  ENCFF007ZXP H3K27ac    Data format 
     ENCFF024AYJ_H3K36me3  ENCFF024AYJ H3K36me3    Data format 
     ENCFF036UAI_polyA_plus_RNA-seq  ENCFF036UAI polyA_plus_RNA-seq    Data format 
     ENCFF050AUP_H3K36me3  ENCFF050AUP H3K36me3    Data format 
     ENCFF054GEN_polyA_plus_RNA-seq  ENCFF054GEN polyA_plus_RNA-seq    Data format 
     ENCFF058WBO_H3K27ac  ENCFF058WBO H3K27ac    Data format 
     ENCFF070WYV_polyA_plus_RNA-seq  ENCFF070WYV polyA_plus_RNA-seq    Data format 
     ENCFF119ARK_H3K36me3  ENCFF119ARK H3K36me3    Data format 
     ENCFF119NPH_H3K4me3  ENCFF119NPH H3K4me3    Data format 
     ENCFF124AKT_H3K27ac  ENCFF124AKT H3K27ac    Data format 
     ENCFF135FCK_H3K27ac  ENCFF135FCK H3K27ac    Data format 
     ENCFF138QDA_H3K4me1  ENCFF138QDA H3K4me1    Data format 
     ENCFF145ENV_H3K9me3  ENCFF145ENV H3K9me3    Data format 
     ENCFF166FRD_polyA_plus_RNA-seq  ENCFF166FRD polyA_plus_RNA-seq    Data format 
     ENCFF189OAL_H3K36me3  ENCFF189OAL H3K36me3    Data format 
     ENCFF213FPF_WGBS  ENCFF213FPF WGBS    Data format 
     ENCFF213IDE_H3K9me3  ENCFF213IDE H3K9me3    Data format 
     ENCFF226SJT_H3K4me1  ENCFF226SJT H3K4me1    Data format 
     ENCFF296EZR_H3K27ac  ENCFF296EZR H3K27ac    Data format 
     ENCFF304GQR_polyA_plus_RNA-seq  ENCFF304GQR polyA_plus_RNA-seq    Data format 
     ENCFF345FEN_H3K27me3  ENCFF345FEN H3K27me3    Data format 
     ENCFF359JKU_H3K4me1  ENCFF359JKU H3K4me1    Data format 
     ENCFF361CCL_H3K27ac  ENCFF361CCL H3K27ac    Data format 
     ENCFF361OGU_H3K36me3  ENCFF361OGU H3K36me3    Data format 
     ENCFF376JJP_H3K4me3  ENCFF376JJP H3K4me3    Data format 
     ENCFF379NYQ_H3K4me3  ENCFF379NYQ H3K4me3    Data format 
     ENCFF401SNQ_H3K4me3  ENCFF401SNQ H3K4me3    Data format 
     ENCFF402KYC_H3K27me3  ENCFF402KYC H3K27me3    Data format 
     ENCFF423YBA_H3K4me3  ENCFF423YBA H3K4me3    Data format 
     ENCFF460XLD_polyA_plus_RNA-seq  ENCFF460XLD polyA_plus_RNA-seq    Data format 
     ENCFF516AIK_H3K4me1  ENCFF516AIK H3K4me1    Data format 
     ENCFF521JHE_H3K27me3  ENCFF521JHE H3K27me3    Data format 
     ENCFF526NXJ_H3K9me3  ENCFF526NXJ H3K9me3    Data format 
     ENCFF528VSB_H3K4me1  ENCFF528VSB H3K4me1    Data format 
     ENCFF529UBG_H3K4me3  ENCFF529UBG H3K4me3    Data format 
     ENCFF529ZIO_H3K27me3  ENCFF529ZIO H3K27me3    Data format 
     ENCFF539JYE_H3K9me3  ENCFF539JYE H3K9me3    Data format 
     ENCFF540HPF_H3K27me3  ENCFF540HPF H3K27me3    Data format 
     ENCFF543HQM_H3K36me3  ENCFF543HQM H3K36me3    Data format 
     ENCFF549XKP_H3K9me3  ENCFF549XKP H3K9me3    Data format 
     ENCFF582CKF_polyA_plus_RNA-seq  ENCFF582CKF polyA_plus_RNA-seq    Data format 
     ENCFF584AMT_H3K27me3  ENCFF584AMT H3K27me3    Data format 
     ENCFF604CUE_H3K9me3  ENCFF604CUE H3K9me3    Data format 
     ENCFF605ZMK_H3K27ac  ENCFF605ZMK H3K27ac    Data format 
     ENCFF640UBB_H3K27me3  ENCFF640UBB H3K27me3    Data format 
     ENCFF646VBS_polyA_plus_RNA-seq  ENCFF646VBS polyA_plus_RNA-seq    Data format 
     ENCFF659LGZ_polyA_plus_RNA-seq  ENCFF659LGZ polyA_plus_RNA-seq    Data format 
     ENCFF664ISA_polyA_plus_RNA-seq  ENCFF664ISA polyA_plus_RNA-seq    Data format 
     ENCFF676QBK_H3K4me1  ENCFF676QBK H3K4me1    Data format 
     ENCFF717OLO_polyA_plus_RNA-seq  ENCFF717OLO polyA_plus_RNA-seq    Data format 
     ENCFF721EMT_H3K36me3  ENCFF721EMT H3K36me3    Data format 
     ENCFF726UGI_H3K4me1  ENCFF726UGI H3K4me1    Data format 
     ENCFF731PEV_H3K9me3  ENCFF731PEV H3K9me3    Data format 
     ENCFF747KIJ_polyA_plus_RNA-seq  ENCFF747KIJ polyA_plus_RNA-seq    Data format 
     ENCFF763SPE_H3K27me3  ENCFF763SPE H3K27me3    Data format 
     ENCFF817UXP_polyA_plus_RNA-seq  ENCFF817UXP polyA_plus_RNA-seq    Data format 
     ENCFF820TKC_polyA_plus_RNA-seq  ENCFF820TKC polyA_plus_RNA-seq    Data format 
     ENCFF883EEB_H3K27ac  ENCFF883EEB H3K27ac    Data format 
     ENCFF901ISK_polyA_plus_RNA-seq  ENCFF901ISK polyA_plus_RNA-seq    Data format 
     ENCFF952VBL_H3K9me3  ENCFF952VBL H3K9me3    Data format 
     ENCFF961CCA_polyA_plus_RNA-seq  ENCFF961CCA polyA_plus_RNA-seq    Data format 
     ENCFF963VCR_H3K4me1  ENCFF963VCR H3K4me1    Data format 
     ENCFF974NRB_H3K36me3  ENCFF974NRB H3K36me3    Data format 
     ENCFF984ZZC_H3K4me3  ENCFF984ZZC H3K4me3    Data format 
     ENCFF995GIN_H3K4me3  ENCFF995GIN H3K4me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:right_cardiac_atrium
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF