Sample Summary skeletal_muscle_tissue Summary Track Settings
 
Roadmap Epigenome skeletal_muscle_tissue Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Overlay method:
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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
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     ENCFF026GRY_H3K4me1  ENCFF026GRY H3K4me1    Data format 
     ENCFF037SMX_H3K27me3  ENCFF037SMX H3K27me3    Data format 
     ENCFF038ZQI_H3K4me3  ENCFF038ZQI H3K4me3    Data format 
     ENCFF040MCF_H3K4me1  ENCFF040MCF H3K4me1    Data format 
     ENCFF043TCQ_H3K9ac  ENCFF043TCQ H3K9ac    Data format 
     ENCFF045HTM_H3K4me1  ENCFF045HTM H3K4me1    Data format 
     ENCFF060CGT_H3K4me1  ENCFF060CGT H3K4me1    Data format 
     ENCFF082TDS_H3K36me3  ENCFF082TDS H3K36me3    Data format 
     ENCFF084TKR_H3K27me3  ENCFF084TKR H3K27me3    Data format 
     ENCFF096AVB_H3K27ac  ENCFF096AVB H3K27ac    Data format 
     ENCFF141YUO_H3K4me3  ENCFF141YUO H3K4me3    Data format 
     ENCFF199QXO_H3K9ac  ENCFF199QXO H3K9ac    Data format 
     ENCFF206ISV_H3K4me1  ENCFF206ISV H3K4me1    Data format 
     ENCFF210EIJ_H3K27me3  ENCFF210EIJ H3K27me3    Data format 
     ENCFF223TMR_H3K4me1  ENCFF223TMR H3K4me1    Data format 
     ENCFF241CSS_H3K27me3  ENCFF241CSS H3K27me3    Data format 
     ENCFF251CHW_H3K9ac  ENCFF251CHW H3K9ac    Data format 
     ENCFF251VJA_H3K9me3  ENCFF251VJA H3K9me3    Data format 
     ENCFF260RKQ_H3K9me3  ENCFF260RKQ H3K9me3    Data format 
     ENCFF288QMN_H3K4me3  ENCFF288QMN H3K4me3    Data format 
     ENCFF294SPV_H3K27me3  ENCFF294SPV H3K27me3    Data format 
     ENCFF300WCC_H3K4me1  ENCFF300WCC H3K4me1    Data format 
     ENCFF307HCZ_H3K4me1  ENCFF307HCZ H3K4me1    Data format 
     ENCFF313XUD_H3K9me3  ENCFF313XUD H3K9me3    Data format 
     ENCFF315HCK_H3K36me3  ENCFF315HCK H3K36me3    Data format 
     ENCFF319LNA_H3K9me3  ENCFF319LNA H3K9me3    Data format 
     ENCFF326FLL_H3K4me3  ENCFF326FLL H3K4me3    Data format 
     ENCFF329LXD_H3K9ac  ENCFF329LXD H3K9ac    Data format 
     ENCFF349JNY_H3K36me3  ENCFF349JNY H3K36me3    Data format 
     ENCFF370JJW_H3K9me3  ENCFF370JJW H3K9me3    Data format 
     ENCFF380OMR_H3K4me1  ENCFF380OMR H3K4me1    Data format 
     ENCFF388RQP_H3K27me3  ENCFF388RQP H3K27me3    Data format 
     ENCFF398ZQZ_H3K27me3  ENCFF398ZQZ H3K27me3    Data format 
     ENCFF406CAU_H3K9me3  ENCFF406CAU H3K9me3    Data format 
     ENCFF423DJC_H3K4me1  ENCFF423DJC H3K4me1    Data format 
     ENCFF429IWC_H3K27me3  ENCFF429IWC H3K27me3    Data format 
     ENCFF432AWH_H3K4me3  ENCFF432AWH H3K4me3    Data format 
     ENCFF465AKW_H3K4me3  ENCFF465AKW H3K4me3    Data format 
     ENCFF488WJO_H3K9me3  ENCFF488WJO H3K9me3    Data format 
     ENCFF504BUT_H3K36me3  ENCFF504BUT H3K36me3    Data format 
     ENCFF507TJP_H3K27me3  ENCFF507TJP H3K27me3    Data format 
     ENCFF512VEK_H3K4me3  ENCFF512VEK H3K4me3    Data format 
     ENCFF525KYJ_H3K4me3  ENCFF525KYJ H3K4me3    Data format 
     ENCFF532TZY_H3K9ac  ENCFF532TZY H3K9ac    Data format 
     ENCFF539QDN_H3K9ac  ENCFF539QDN H3K9ac    Data format 
     ENCFF569OIE_H3K36me3  ENCFF569OIE H3K36me3    Data format 
     ENCFF574GNM_H3K36me3  ENCFF574GNM H3K36me3    Data format 
     ENCFF582DLN_H3K9ac  ENCFF582DLN H3K9ac    Data format 
     ENCFF588QAP_H3K27me3  ENCFF588QAP H3K27me3    Data format 
     ENCFF597BTG_H3K4me1  ENCFF597BTG H3K4me1    Data format 
     ENCFF598MWN_H3K27me3  ENCFF598MWN H3K27me3    Data format 
     ENCFF608BPX_H3K4me3  ENCFF608BPX H3K4me3    Data format 
     ENCFF617NYM_H3K9me3  ENCFF617NYM H3K9me3    Data format 
     ENCFF622SAI_H3K27ac  ENCFF622SAI H3K27ac    Data format 
     ENCFF639FAU_H3K4me1  ENCFF639FAU H3K4me1    Data format 
     ENCFF665EFZ_H3K9me3  ENCFF665EFZ H3K9me3    Data format 
     ENCFF675JJF_H3K9ac  ENCFF675JJF H3K9ac    Data format 
     ENCFF676ZEK_H3K9me3  ENCFF676ZEK H3K9me3    Data format 
     ENCFF699SCU_H3K9ac  ENCFF699SCU H3K9ac    Data format 
     ENCFF730HGY_H3K36me3  ENCFF730HGY H3K36me3    Data format 
     ENCFF734AKA_H3K9ac  ENCFF734AKA H3K9ac    Data format 
     ENCFF735EGF_H3K4me3  ENCFF735EGF H3K4me3    Data format 
     ENCFF775MWB_H3K36me3  ENCFF775MWB H3K36me3    Data format 
     ENCFF788KIN_H3K4me3  ENCFF788KIN H3K4me3    Data format 
     ENCFF820MYI_H3K9ac  ENCFF820MYI H3K9ac    Data format 
     ENCFF821ENM_H3K27ac  ENCFF821ENM H3K27ac    Data format 
     ENCFF853IHG_H3K36me3  ENCFF853IHG H3K36me3    Data format 
     ENCFF886JRS_H3K9me3  ENCFF886JRS H3K9me3    Data format 
     ENCFF904ZMJ_H3K9me3  ENCFF904ZMJ H3K9me3    Data format 
     ENCFF914LRR_H3K4me3  ENCFF914LRR H3K4me3    Data format 
     ENCFF950JTD_H3K27me3  ENCFF950JTD H3K27me3    Data format 
     ENCFF953VID_H3K36me3  ENCFF953VID H3K36me3    Data format 
     ENCFF962HWM_H3K27ac  ENCFF962HWM H3K27ac    Data format 
     ENCFF980QIP_H3K36me3  ENCFF980QIP H3K36me3    Data format 
     ENCFF981BQM_H3K9ac  ENCFF981BQM H3K9ac    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:skeletal_muscle_satellite_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF