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     ENCFF003FAF_polyA_plus_RNA-seq  ENCFF003FAF polyA_plus_RNA-seq    Data format 
     ENCFF003WWW_H3K4me1  ENCFF003WWW H3K4me1    Data format 
     ENCFF003ZRK_H3K36me3  ENCFF003ZRK H3K36me3    Data format 
     ENCFF008CRB_polyA_plus_RNA-seq  ENCFF008CRB polyA_plus_RNA-seq    Data format 
     ENCFF010WXE_polyA_plus_RNA-seq  ENCFF010WXE polyA_plus_RNA-seq    Data format 
     ENCFF018NVW_polyA_plus_RNA-seq  ENCFF018NVW polyA_plus_RNA-seq    Data format 
     ENCFF022RHC_polyA_plus_RNA-seq  ENCFF022RHC polyA_plus_RNA-seq    Data format 
     ENCFF024YLU_H3K27ac  ENCFF024YLU H3K27ac    Data format 
     ENCFF025PVV_WGBS  ENCFF025PVV WGBS    Data format 
     ENCFF027BRR_polyA_plus_RNA-seq  ENCFF027BRR polyA_plus_RNA-seq    Data format 
     ENCFF030ZTE_polyA_plus_RNA-seq  ENCFF030ZTE polyA_plus_RNA-seq    Data format 
     ENCFF033OVU_H3K4me3  ENCFF033OVU H3K4me3    Data format 
     ENCFF035YZD_polyA_plus_RNA-seq  ENCFF035YZD polyA_plus_RNA-seq    Data format 
     ENCFF050KHZ_WGBS  ENCFF050KHZ WGBS    Data format 
     ENCFF053FMQ_DNase-seq  ENCFF053FMQ DNase-seq    Data format 
     ENCFF058IDF_polyA_plus_RNA-seq  ENCFF058IDF polyA_plus_RNA-seq    Data format 
     ENCFF085SNP_H3K27me3  ENCFF085SNP H3K27me3    Data format 
     ENCFF087KLN_H3K27ac  ENCFF087KLN H3K27ac    Data format 
     ENCFF103DRL_DNase-seq  ENCFF103DRL DNase-seq    Data format 
     ENCFF126FCD_H3K4me3  ENCFF126FCD H3K4me3    Data format 
     ENCFF128BKW_H3K4me1  ENCFF128BKW H3K4me1    Data format 
     ENCFF130NTR_polyA_plus_RNA-seq  ENCFF130NTR polyA_plus_RNA-seq    Data format 
     ENCFF132CMH_H3K4me3  ENCFF132CMH H3K4me3    Data format 
     ENCFF136GWM_polyA_plus_RNA-seq  ENCFF136GWM polyA_plus_RNA-seq    Data format 
     ENCFF138EEI_polyA_plus_RNA-seq  ENCFF138EEI polyA_plus_RNA-seq    Data format 
     ENCFF139WXH_H3K9me3  ENCFF139WXH H3K9me3    Data format 
     ENCFF145UUI_polyA_plus_RNA-seq  ENCFF145UUI polyA_plus_RNA-seq    Data format 
     ENCFF150VPT_H3K4me1  ENCFF150VPT H3K4me1    Data format 
     ENCFF155ETQ_H3K36me3  ENCFF155ETQ H3K36me3    Data format 
     ENCFF164TCN_polyA_plus_RNA-seq  ENCFF164TCN polyA_plus_RNA-seq    Data format 
     ENCFF165VMD_H3K27me3  ENCFF165VMD H3K27me3    Data format 
     ENCFF166LFI_polyA_plus_RNA-seq  ENCFF166LFI polyA_plus_RNA-seq    Data format 
     ENCFF171XIY_polyA_plus_RNA-seq  ENCFF171XIY polyA_plus_RNA-seq    Data format 
     ENCFF175DCA_H3K9me3  ENCFF175DCA H3K9me3    Data format 
     ENCFF181SON_H3K9me3  ENCFF181SON H3K9me3    Data format 
     ENCFF195IPZ_polyA_plus_RNA-seq  ENCFF195IPZ polyA_plus_RNA-seq    Data format 
     ENCFF208PEH_DNase-seq  ENCFF208PEH DNase-seq    Data format 
     ENCFF209YFM_DNase-seq  ENCFF209YFM DNase-seq    Data format 
     ENCFF216LPR_H3K27ac  ENCFF216LPR H3K27ac    Data format 
     ENCFF224GPU_polyA_plus_RNA-seq  ENCFF224GPU polyA_plus_RNA-seq    Data format 
     ENCFF228RNB_H3K27ac  ENCFF228RNB H3K27ac    Data format 
     ENCFF233JCD_WGBS  ENCFF233JCD WGBS    Data format 
     ENCFF236NXW_DNase-seq  ENCFF236NXW DNase-seq    Data format 
     ENCFF243OFZ_DNase-seq  ENCFF243OFZ DNase-seq    Data format 
     ENCFF246LCK_H3K4me3  ENCFF246LCK H3K4me3    Data format 
     ENCFF246RCD_polyA_plus_RNA-seq  ENCFF246RCD polyA_plus_RNA-seq    Data format 
     ENCFF264UTH_H3K27me3  ENCFF264UTH H3K27me3    Data format 
     ENCFF282LNU_DNase-seq  ENCFF282LNU DNase-seq    Data format 
     ENCFF286HFF_H3K4me3  ENCFF286HFF H3K4me3    Data format 
     ENCFF290KQT_H3K9me3  ENCFF290KQT H3K9me3    Data format 
     ENCFF298CPL_polyA_plus_RNA-seq  ENCFF298CPL polyA_plus_RNA-seq    Data format 
     ENCFF310VRG_H3K27ac  ENCFF310VRG H3K27ac    Data format 
     ENCFF318PWA_DNase-seq  ENCFF318PWA DNase-seq    Data format 
     ENCFF318UCG_H3K4me1  ENCFF318UCG H3K4me1    Data format 
     ENCFF343DFM_DNase-seq  ENCFF343DFM DNase-seq    Data format 
     ENCFF357DTZ_H3K27ac  ENCFF357DTZ H3K27ac    Data format 
     ENCFF359DGK_H3K27ac  ENCFF359DGK H3K27ac    Data format 
     ENCFF359LKO_DNase-seq  ENCFF359LKO DNase-seq    Data format 
     ENCFF361QQP_polyA_plus_RNA-seq  ENCFF361QQP polyA_plus_RNA-seq    Data format 
     ENCFF370FOR_H3K36me3  ENCFF370FOR H3K36me3    Data format 
     ENCFF372VIC_H3K36me3  ENCFF372VIC H3K36me3    Data format 
     ENCFF374WLB_DNase-seq  ENCFF374WLB DNase-seq    Data format 
     ENCFF375KAQ_polyA_plus_RNA-seq  ENCFF375KAQ polyA_plus_RNA-seq    Data format 
     ENCFF383HRF_H3K9me3  ENCFF383HRF H3K9me3    Data format 
     ENCFF389EEG_DNase-seq  ENCFF389EEG DNase-seq    Data format 
     ENCFF407WJQ_H3K4me1  ENCFF407WJQ H3K4me1    Data format 
     ENCFF416EBY_polyA_plus_RNA-seq  ENCFF416EBY polyA_plus_RNA-seq    Data format 
     ENCFF439FMZ_H3K4me1  ENCFF439FMZ H3K4me1    Data format 
     ENCFF454DUN_H3K27me3  ENCFF454DUN H3K27me3    Data format 
     ENCFF457LGA_H3K9me3  ENCFF457LGA H3K9me3    Data format 
     ENCFF458QQU_polyA_plus_RNA-seq  ENCFF458QQU polyA_plus_RNA-seq    Data format 
     ENCFF465TWC_H3K27ac  ENCFF465TWC H3K27ac    Data format 
     ENCFF481AMD_polyA_plus_RNA-seq  ENCFF481AMD polyA_plus_RNA-seq    Data format 
     ENCFF485YEL_H3K9me3  ENCFF485YEL H3K9me3    Data format 
     ENCFF487DEZ_polyA_plus_RNA-seq  ENCFF487DEZ polyA_plus_RNA-seq    Data format 
     ENCFF494RFU_H3K27ac  ENCFF494RFU H3K27ac    Data format 
     ENCFF514NYA_DNase-seq  ENCFF514NYA DNase-seq    Data format 
     ENCFF515SJR_H3K27ac  ENCFF515SJR H3K27ac    Data format 
     ENCFF519HZK_H3K27ac  ENCFF519HZK H3K27ac    Data format 
     ENCFF521BFE_H3K36me3  ENCFF521BFE H3K36me3    Data format 
     ENCFF528HJI_H3K27me3  ENCFF528HJI H3K27me3    Data format 
     ENCFF529DXH_H3K36me3  ENCFF529DXH H3K36me3    Data format 
     ENCFF537NCQ_WGBS  ENCFF537NCQ WGBS    Data format 
     ENCFF552GYH_H3K4me3  ENCFF552GYH H3K4me3    Data format 
     ENCFF553ZMA_H3K4me3  ENCFF553ZMA H3K4me3    Data format 
     ENCFF566FYS_H3K4me3  ENCFF566FYS H3K4me3    Data format 
     ENCFF567IJV_H3K4me1  ENCFF567IJV H3K4me1    Data format 
     ENCFF567VUL_H3K27me3  ENCFF567VUL H3K27me3    Data format 
     ENCFF572YIH_polyA_plus_RNA-seq  ENCFF572YIH polyA_plus_RNA-seq    Data format 
     ENCFF584DSR_DNase-seq  ENCFF584DSR DNase-seq    Data format 
     ENCFF587MXD_polyA_plus_RNA-seq  ENCFF587MXD polyA_plus_RNA-seq    Data format 
     ENCFF592XZA_polyA_plus_RNA-seq  ENCFF592XZA polyA_plus_RNA-seq    Data format 
     ENCFF600LCF_WGBS  ENCFF600LCF WGBS    Data format 
     ENCFF603QDZ_H3K27me3  ENCFF603QDZ H3K27me3    Data format 
     ENCFF605LGR_polyA_plus_RNA-seq  ENCFF605LGR polyA_plus_RNA-seq    Data format 
     ENCFF606UAG_polyA_plus_RNA-seq  ENCFF606UAG polyA_plus_RNA-seq    Data format 
     ENCFF607KCL_H3K27me3  ENCFF607KCL H3K27me3    Data format 
     ENCFF608ZHE_H3K27ac  ENCFF608ZHE H3K27ac    Data format 
     ENCFF619LIB_DNase-seq  ENCFF619LIB DNase-seq    Data format 
     ENCFF631CCA_H3K27me3  ENCFF631CCA H3K27me3    Data format 
     ENCFF632TGV_H3K36me3  ENCFF632TGV H3K36me3    Data format 
     ENCFF643IRS_H3K27ac  ENCFF643IRS H3K27ac    Data format 
     ENCFF643NOK_polyA_plus_RNA-seq  ENCFF643NOK polyA_plus_RNA-seq    Data format 
     ENCFF645AIA_polyA_plus_RNA-seq  ENCFF645AIA polyA_plus_RNA-seq    Data format 
     ENCFF654IWW_polyA_plus_RNA-seq  ENCFF654IWW polyA_plus_RNA-seq    Data format 
     ENCFF656FSH_H3K9me3  ENCFF656FSH H3K9me3    Data format 
     ENCFF659QSC_H3K36me3  ENCFF659QSC H3K36me3    Data format 
     ENCFF661MCT_H3K4me3  ENCFF661MCT H3K4me3    Data format 
     ENCFF662MRZ_polyA_plus_RNA-seq  ENCFF662MRZ polyA_plus_RNA-seq    Data format 
     ENCFF665AYQ_H3K27me3  ENCFF665AYQ H3K27me3    Data format 
     ENCFF670KWK_H3K4me1  ENCFF670KWK H3K4me1    Data format 
     ENCFF671BMS_DNase-seq  ENCFF671BMS DNase-seq    Data format 
     ENCFF678YLH_H3K36me3  ENCFF678YLH H3K36me3    Data format 
     ENCFF684GCD_H3K4me1  ENCFF684GCD H3K4me1    Data format 
     ENCFF687KFN_DNase-seq  ENCFF687KFN DNase-seq    Data format 
     ENCFF695NFP_H3K9me3  ENCFF695NFP H3K9me3    Data format 
     ENCFF695VXT_H3K9me3  ENCFF695VXT H3K9me3    Data format 
     ENCFF701JGR_H3K4me1  ENCFF701JGR H3K4me1    Data format 
     ENCFF718WZF_DNase-seq  ENCFF718WZF DNase-seq    Data format 
     ENCFF720KHC_DNase-seq  ENCFF720KHC DNase-seq    Data format 
     ENCFF729PQU_DNase-seq  ENCFF729PQU DNase-seq    Data format 
     ENCFF746JHF_DNase-seq  ENCFF746JHF DNase-seq    Data format 
     ENCFF746ZTE_WGBS  ENCFF746ZTE WGBS    Data format 
     ENCFF757ZQU_H3K27ac  ENCFF757ZQU H3K27ac    Data format 
     ENCFF763ZFF_polyA_plus_RNA-seq  ENCFF763ZFF polyA_plus_RNA-seq    Data format 
     ENCFF766WNF_polyA_plus_RNA-seq  ENCFF766WNF polyA_plus_RNA-seq    Data format 
     ENCFF769LAG_polyA_plus_RNA-seq  ENCFF769LAG polyA_plus_RNA-seq    Data format 
     ENCFF777VVW_polyA_plus_RNA-seq  ENCFF777VVW polyA_plus_RNA-seq    Data format 
     ENCFF791NPC_polyA_plus_RNA-seq  ENCFF791NPC polyA_plus_RNA-seq    Data format 
     ENCFF795ATM_H3K27ac  ENCFF795ATM H3K27ac    Data format 
     ENCFF820HMC_DNase-seq  ENCFF820HMC DNase-seq    Data format 
     ENCFF825TAZ_H3K27me3  ENCFF825TAZ H3K27me3    Data format 
     ENCFF840WKB_H3K9me3  ENCFF840WKB H3K9me3    Data format 
     ENCFF843QTK_H3K4me3  ENCFF843QTK H3K4me3    Data format 
     ENCFF849FLT_polyA_plus_RNA-seq  ENCFF849FLT polyA_plus_RNA-seq    Data format 
     ENCFF872TGD_H3K36me3  ENCFF872TGD H3K36me3    Data format 
     ENCFF875PHD_DNase-seq  ENCFF875PHD DNase-seq    Data format 
     ENCFF888MDP_polyA_plus_RNA-seq  ENCFF888MDP polyA_plus_RNA-seq    Data format 
     ENCFF894JGX_DNase-seq  ENCFF894JGX DNase-seq    Data format 
     ENCFF896MIT_H3K9me3  ENCFF896MIT H3K9me3    Data format 
     ENCFF905RDO_H3K4me1  ENCFF905RDO H3K4me1    Data format 
     ENCFF913RNT_polyA_plus_RNA-seq  ENCFF913RNT polyA_plus_RNA-seq    Data format 
     ENCFF920GAK_polyA_plus_RNA-seq  ENCFF920GAK polyA_plus_RNA-seq    Data format 
     ENCFF923KVL_H3K27me3  ENCFF923KVL H3K27me3    Data format 
     ENCFF941TND_H3K27ac  ENCFF941TND H3K27ac    Data format 
     ENCFF944PRY_H3K36me3  ENCFF944PRY H3K36me3    Data format 
     ENCFF947KGU_polyA_plus_RNA-seq  ENCFF947KGU polyA_plus_RNA-seq    Data format 
     ENCFF949LUE_polyA_plus_RNA-seq  ENCFF949LUE polyA_plus_RNA-seq    Data format 
     ENCFF954WCZ_DNase-seq  ENCFF954WCZ DNase-seq    Data format 
     ENCFF961WAO_polyA_plus_RNA-seq  ENCFF961WAO polyA_plus_RNA-seq    Data format 
     ENCFF966IYT_DNase-seq  ENCFF966IYT DNase-seq    Data format 
     ENCFF971BRH_polyA_plus_RNA-seq  ENCFF971BRH polyA_plus_RNA-seq    Data format 
     ENCFF978EHV_H3K4me3  ENCFF978EHV H3K4me3    Data format 
     ENCFF988AAQ_H3K4me3  ENCFF988AAQ H3K4me3    Data format 
     ENCFF988OUD_H3K36me3  ENCFF988OUD H3K36me3    Data format 
     ENCFF991EMM_H3K4me1  ENCFF991EMM H3K4me1    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:skeletal_muscle_tissue
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF