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Roadmap Epigenome spleen Summary

Track collection: Sample Summary

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     ENCFF004PUZ_H3K4me1  ENCFF004PUZ H3K4me1    Data format 
     ENCFF038DVB_polyA_plus_RNA-seq  ENCFF038DVB polyA_plus_RNA-seq    Data format 
     ENCFF039FRP_WGBS  ENCFF039FRP WGBS    Data format 
     ENCFF046HZU_H3K27ac  ENCFF046HZU H3K27ac    Data format 
     ENCFF046KVL_polyA_plus_RNA-seq  ENCFF046KVL polyA_plus_RNA-seq    Data format 
     ENCFF060XAI_polyA_plus_RNA-seq  ENCFF060XAI polyA_plus_RNA-seq    Data format 
     ENCFF070OZJ_polyA_plus_RNA-seq  ENCFF070OZJ polyA_plus_RNA-seq    Data format 
     ENCFF079LZD_H3K36me3  ENCFF079LZD H3K36me3    Data format 
     ENCFF089SDX_polyA_plus_RNA-seq  ENCFF089SDX polyA_plus_RNA-seq    Data format 
     ENCFF090EZE_DNase-seq  ENCFF090EZE DNase-seq    Data format 
     ENCFF095WRU_H3K36me3  ENCFF095WRU H3K36me3    Data format 
     ENCFF101OCU_H3K9me3  ENCFF101OCU H3K9me3    Data format 
     ENCFF106JAJ_polyA_plus_RNA-seq  ENCFF106JAJ polyA_plus_RNA-seq    Data format 
     ENCFF106VMM_H3K4me3  ENCFF106VMM H3K4me3    Data format 
     ENCFF116ITT_H3K9me3  ENCFF116ITT H3K9me3    Data format 
     ENCFF150IKO_H3K4me1  ENCFF150IKO H3K4me1    Data format 
     ENCFF151ICG_polyA_plus_RNA-seq  ENCFF151ICG polyA_plus_RNA-seq    Data format 
     ENCFF168WRO_polyA_plus_RNA-seq  ENCFF168WRO polyA_plus_RNA-seq    Data format 
     ENCFF175CGT_H3K27me3  ENCFF175CGT H3K27me3    Data format 
     ENCFF208RWY_polyA_plus_RNA-seq  ENCFF208RWY polyA_plus_RNA-seq    Data format 
     ENCFF215RZB_H3K27ac  ENCFF215RZB H3K27ac    Data format 
     ENCFF221SSR_polyA_plus_RNA-seq  ENCFF221SSR polyA_plus_RNA-seq    Data format 
     ENCFF223HFQ_H3K4me1  ENCFF223HFQ H3K4me1    Data format 
     ENCFF241ZOH_H3K27me3  ENCFF241ZOH H3K27me3    Data format 
     ENCFF249RZJ_polyA_plus_RNA-seq  ENCFF249RZJ polyA_plus_RNA-seq    Data format 
     ENCFF270KVW_H3K9me3  ENCFF270KVW H3K9me3    Data format 
     ENCFF271FIA_H3K4me3  ENCFF271FIA H3K4me3    Data format 
     ENCFF302LWL_H3K9me3  ENCFF302LWL H3K9me3    Data format 
     ENCFF315BLU_polyA_plus_RNA-seq  ENCFF315BLU polyA_plus_RNA-seq    Data format 
     ENCFF349KZG_polyA_plus_RNA-seq  ENCFF349KZG polyA_plus_RNA-seq    Data format 
     ENCFF380SRO_H3K4me3  ENCFF380SRO H3K4me3    Data format 
     ENCFF381WIP_H3K4me1  ENCFF381WIP H3K4me1    Data format 
     ENCFF383TBV_H3K27ac  ENCFF383TBV H3K27ac    Data format 
     ENCFF400CTE_H3K4me3  ENCFF400CTE H3K4me3    Data format 
     ENCFF415CJV_H3K27me3  ENCFF415CJV H3K27me3    Data format 
     ENCFF416NYR_H3K36me3  ENCFF416NYR H3K36me3    Data format 
     ENCFF422YPS_WGBS  ENCFF422YPS WGBS    Data format 
     ENCFF426XDX_polyA_plus_RNA-seq  ENCFF426XDX polyA_plus_RNA-seq    Data format 
     ENCFF428KNK_H3K27me3  ENCFF428KNK H3K27me3    Data format 
     ENCFF433LRX_polyA_plus_RNA-seq  ENCFF433LRX polyA_plus_RNA-seq    Data format 
     ENCFF436HZR_H3K4me3  ENCFF436HZR H3K4me3    Data format 
     ENCFF441DDX_polyA_plus_RNA-seq  ENCFF441DDX polyA_plus_RNA-seq    Data format 
     ENCFF469XFX_polyA_plus_RNA-seq  ENCFF469XFX polyA_plus_RNA-seq    Data format 
     ENCFF494ARW_H3K36me3  ENCFF494ARW H3K36me3    Data format 
     ENCFF512BSM_polyA_plus_RNA-seq  ENCFF512BSM polyA_plus_RNA-seq    Data format 
     ENCFF522NPC_H3K27ac  ENCFF522NPC H3K27ac    Data format 
     ENCFF527UAA_polyA_plus_RNA-seq  ENCFF527UAA polyA_plus_RNA-seq    Data format 
     ENCFF529KNT_H3K27ac  ENCFF529KNT H3K27ac    Data format 
     ENCFF530YMW_H3K9me3  ENCFF530YMW H3K9me3    Data format 
     ENCFF557ZRD_H3K27ac  ENCFF557ZRD H3K27ac    Data format 
     ENCFF584XKW_H3K27ac  ENCFF584XKW H3K27ac    Data format 
     ENCFF585DDY_H3K9me3  ENCFF585DDY H3K9me3    Data format 
     ENCFF603ZZV_polyA_plus_RNA-seq  ENCFF603ZZV polyA_plus_RNA-seq    Data format 
     ENCFF610OAY_polyA_plus_RNA-seq  ENCFF610OAY polyA_plus_RNA-seq    Data format 
     ENCFF613LMG_polyA_plus_RNA-seq  ENCFF613LMG polyA_plus_RNA-seq    Data format 
     ENCFF620UYN_H3K4me1  ENCFF620UYN H3K4me1    Data format 
     ENCFF627DBB_H3K27ac  ENCFF627DBB H3K27ac    Data format 
     ENCFF666NDP_polyA_plus_RNA-seq  ENCFF666NDP polyA_plus_RNA-seq    Data format 
     ENCFF674UUX_H3K9me3  ENCFF674UUX H3K9me3    Data format 
     ENCFF705RLR_H3K27me3  ENCFF705RLR H3K27me3    Data format 
     ENCFF715QLY_polyA_plus_RNA-seq  ENCFF715QLY polyA_plus_RNA-seq    Data format 
     ENCFF720NNG_polyA_plus_RNA-seq  ENCFF720NNG polyA_plus_RNA-seq    Data format 
     ENCFF726CPF_H3K27ac  ENCFF726CPF H3K27ac    Data format 
     ENCFF735OIS_H3K4me3  ENCFF735OIS H3K4me3    Data format 
     ENCFF761MXU_H3K9me3  ENCFF761MXU H3K9me3    Data format 
     ENCFF768CYU_polyA_plus_RNA-seq  ENCFF768CYU polyA_plus_RNA-seq    Data format 
     ENCFF773LAE_polyA_plus_RNA-seq  ENCFF773LAE polyA_plus_RNA-seq    Data format 
     ENCFF776HNQ_H3K4me1  ENCFF776HNQ H3K4me1    Data format 
     ENCFF776OTX_polyA_plus_RNA-seq  ENCFF776OTX polyA_plus_RNA-seq    Data format 
     ENCFF793FYN_H3K27me3  ENCFF793FYN H3K27me3    Data format 
     ENCFF800UGW_polyA_plus_RNA-seq  ENCFF800UGW polyA_plus_RNA-seq    Data format 
     ENCFF805HXL_H3K27ac  ENCFF805HXL H3K27ac    Data format 
     ENCFF849NRD_H3K36me3  ENCFF849NRD H3K36me3    Data format 
     ENCFF850AFK_H3K4me1  ENCFF850AFK H3K4me1    Data format 
     ENCFF859PGH_H3K27ac  ENCFF859PGH H3K27ac    Data format 
     ENCFF866FBP_H3K27me3  ENCFF866FBP H3K27me3    Data format 
     ENCFF866QGH_H3K36me3  ENCFF866QGH H3K36me3    Data format 
     ENCFF884LDL_DNase-seq  ENCFF884LDL DNase-seq    Data format 
     ENCFF897ARW_H3K27ac  ENCFF897ARW H3K27ac    Data format 
     ENCFF906LWW_H3K36me3  ENCFF906LWW H3K36me3    Data format 
     ENCFF924LUC_H3K4me3  ENCFF924LUC H3K4me3    Data format 
     ENCFF932UJH_polyA_plus_RNA-seq  ENCFF932UJH polyA_plus_RNA-seq    Data format 
     ENCFF938STJ_polyA_plus_RNA-seq  ENCFF938STJ polyA_plus_RNA-seq    Data format 
     ENCFF939SGH_H3K4me1  ENCFF939SGH H3K4me1    Data format 
     ENCFF958SIW_H3K4me3  ENCFF958SIW H3K4me3    Data format 
     ENCFF981CYQ_H3K27me3  ENCFF981CYQ H3K27me3    Data format 
     ENCFF981UNF_polyA_plus_RNA-seq  ENCFF981UNF polyA_plus_RNA-seq    Data format 
     ENCFF984IOE_H3K36me3  ENCFF984IOE H3K36me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:CpG_sites_coverage
Sample:spinal_cord
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF