Sample Summary stomach Summary Track Settings
 
Roadmap Epigenome stomach Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

Display mode:       Reset to defaults

Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF005ETE_polyA_plus_RNA-seq  ENCFF005ETE polyA_plus_RNA-seq    Data format 
     ENCFF008JZT_polyA_plus_RNA-seq  ENCFF008JZT polyA_plus_RNA-seq    Data format 
     ENCFF012YOU_H3K36me3  ENCFF012YOU H3K36me3    Data format 
     ENCFF015VNH_H3K27ac  ENCFF015VNH H3K27ac    Data format 
     ENCFF016OBZ_polyA_plus_RNA-seq  ENCFF016OBZ polyA_plus_RNA-seq    Data format 
     ENCFF017FGP_DNase-seq  ENCFF017FGP DNase-seq    Data format 
     ENCFF020HOZ_H3K4me1  ENCFF020HOZ H3K4me1    Data format 
     ENCFF022OWT_DNase-seq  ENCFF022OWT DNase-seq    Data format 
     ENCFF023USS_polyA_plus_RNA-seq  ENCFF023USS polyA_plus_RNA-seq    Data format 
     ENCFF034RXK_H3K27ac  ENCFF034RXK H3K27ac    Data format 
     ENCFF037SVV_H3K27ac  ENCFF037SVV H3K27ac    Data format 
     ENCFF041ACY_H3K36me3  ENCFF041ACY H3K36me3    Data format 
     ENCFF044AMH_polyA_plus_RNA-seq  ENCFF044AMH polyA_plus_RNA-seq    Data format 
     ENCFF047HGQ_DNase-seq  ENCFF047HGQ DNase-seq    Data format 
     ENCFF053AWK_H3K9me3  ENCFF053AWK H3K9me3    Data format 
     ENCFF060KWK_polyA_plus_RNA-seq  ENCFF060KWK polyA_plus_RNA-seq    Data format 
     ENCFF071OYF_H3K9me3  ENCFF071OYF H3K9me3    Data format 
     ENCFF085ALP_H3K9me3  ENCFF085ALP H3K9me3    Data format 
     ENCFF094OEJ_H3K9me3  ENCFF094OEJ H3K9me3    Data format 
     ENCFF095JQS_H3K36me3  ENCFF095JQS H3K36me3    Data format 
     ENCFF095YPY_H3K27ac  ENCFF095YPY H3K27ac    Data format 
     ENCFF102AEL_polyA_plus_RNA-seq  ENCFF102AEL polyA_plus_RNA-seq    Data format 
     ENCFF116RGG_H3K9me3  ENCFF116RGG H3K9me3    Data format 
     ENCFF117ZEN_WGBS  ENCFF117ZEN WGBS    Data format 
     ENCFF125CKD_H3K27ac  ENCFF125CKD H3K27ac    Data format 
     ENCFF133XXT_H3K27ac  ENCFF133XXT H3K27ac    Data format 
     ENCFF138ZHG_DNase-seq  ENCFF138ZHG DNase-seq    Data format 
     ENCFF147YSN_H3K4me1  ENCFF147YSN H3K4me1    Data format 
     ENCFF151AZN_H3K9me3  ENCFF151AZN H3K9me3    Data format 
     ENCFF156VCI_H3K9me3  ENCFF156VCI H3K9me3    Data format 
     ENCFF162VIG_H3K9me3  ENCFF162VIG H3K9me3    Data format 
     ENCFF205CSH_polyA_plus_RNA-seq  ENCFF205CSH polyA_plus_RNA-seq    Data format 
     ENCFF205ZFY_polyA_plus_RNA-seq  ENCFF205ZFY polyA_plus_RNA-seq    Data format 
     ENCFF212QRL_polyA_plus_RNA-seq  ENCFF212QRL polyA_plus_RNA-seq    Data format 
     ENCFF218KJG_H3K27ac  ENCFF218KJG H3K27ac    Data format 
     ENCFF218SJO_DNase-seq  ENCFF218SJO DNase-seq    Data format 
     ENCFF219RIL_DNase-seq  ENCFF219RIL DNase-seq    Data format 
     ENCFF223UYF_H3K4me1  ENCFF223UYF H3K4me1    Data format 
     ENCFF226QEP_H3K27me3  ENCFF226QEP H3K27me3    Data format 
     ENCFF256WXJ_polyA_plus_RNA-seq  ENCFF256WXJ polyA_plus_RNA-seq    Data format 
     ENCFF256XXD_polyA_plus_RNA-seq  ENCFF256XXD polyA_plus_RNA-seq    Data format 
     ENCFF266TFC_polyA_plus_RNA-seq  ENCFF266TFC polyA_plus_RNA-seq    Data format 
     ENCFF270GIG_polyA_plus_RNA-seq  ENCFF270GIG polyA_plus_RNA-seq    Data format 
     ENCFF270VZJ_polyA_plus_RNA-seq  ENCFF270VZJ polyA_plus_RNA-seq    Data format 
     ENCFF276VKS_WGBS  ENCFF276VKS WGBS    Data format 
     ENCFF278HYK_polyA_plus_RNA-seq  ENCFF278HYK polyA_plus_RNA-seq    Data format 
     ENCFF279SZD_polyA_plus_RNA-seq  ENCFF279SZD polyA_plus_RNA-seq    Data format 
     ENCFF279XJK_polyA_plus_RNA-seq  ENCFF279XJK polyA_plus_RNA-seq    Data format 
     ENCFF280CMC_DNase-seq  ENCFF280CMC DNase-seq    Data format 
     ENCFF285DLF_H3K9me3  ENCFF285DLF H3K9me3    Data format 
     ENCFF291BGI_polyA_plus_RNA-seq  ENCFF291BGI polyA_plus_RNA-seq    Data format 
     ENCFF295UWT_polyA_plus_RNA-seq  ENCFF295UWT polyA_plus_RNA-seq    Data format 
     ENCFF298OKD_polyA_plus_RNA-seq  ENCFF298OKD polyA_plus_RNA-seq    Data format 
     ENCFF306EFO_polyA_plus_RNA-seq  ENCFF306EFO polyA_plus_RNA-seq    Data format 
     ENCFF306TOR_H3K9me3  ENCFF306TOR H3K9me3    Data format 
     ENCFF310NVD_DNase-seq  ENCFF310NVD DNase-seq    Data format 
     ENCFF312RWN_polyA_plus_RNA-seq  ENCFF312RWN polyA_plus_RNA-seq    Data format 
     ENCFF320REF_polyA_plus_RNA-seq  ENCFF320REF polyA_plus_RNA-seq    Data format 
     ENCFF330FVQ_H3K27me3  ENCFF330FVQ H3K27me3    Data format 
     ENCFF338HPK_DNase-seq  ENCFF338HPK DNase-seq    Data format 
     ENCFF339HCZ_H3K36me3  ENCFF339HCZ H3K36me3    Data format 
     ENCFF351ENR_polyA_plus_RNA-seq  ENCFF351ENR polyA_plus_RNA-seq    Data format 
     ENCFF352CJO_WGBS  ENCFF352CJO WGBS    Data format 
     ENCFF356MNU_polyA_plus_RNA-seq  ENCFF356MNU polyA_plus_RNA-seq    Data format 
     ENCFF358LGJ_H3K36me3  ENCFF358LGJ H3K36me3    Data format 
     ENCFF358UVV_DNase-seq  ENCFF358UVV DNase-seq    Data format 
     ENCFF361HOE_DNase-seq  ENCFF361HOE DNase-seq    Data format 
     ENCFF362OUW_DNase-seq  ENCFF362OUW DNase-seq    Data format 
     ENCFF362VGS_polyA_plus_RNA-seq  ENCFF362VGS polyA_plus_RNA-seq    Data format 
     ENCFF370VGA_H3K4me1  ENCFF370VGA H3K4me1    Data format 
     ENCFF377JMB_H3K9me3  ENCFF377JMB H3K9me3    Data format 
     ENCFF386YEQ_polyA_plus_RNA-seq  ENCFF386YEQ polyA_plus_RNA-seq    Data format 
     ENCFF399ZRV_H3K4me1  ENCFF399ZRV H3K4me1    Data format 
     ENCFF413VKO_H3K36me3  ENCFF413VKO H3K36me3    Data format 
     ENCFF415QHW_polyA_plus_RNA-seq  ENCFF415QHW polyA_plus_RNA-seq    Data format 
     ENCFF418IUK_H3K4me1  ENCFF418IUK H3K4me1    Data format 
     ENCFF424IXN_DNase-seq  ENCFF424IXN DNase-seq    Data format 
     ENCFF427IFI_DNase-seq  ENCFF427IFI DNase-seq    Data format 
     ENCFF450EHI_DNase-seq  ENCFF450EHI DNase-seq    Data format 
     ENCFF454BDK_H3K27ac  ENCFF454BDK H3K27ac    Data format 
     ENCFF471XGA_H3K4me1  ENCFF471XGA H3K4me1    Data format 
     ENCFF472TGU_H3K27ac  ENCFF472TGU H3K27ac    Data format 
     ENCFF480IYA_H3K27ac  ENCFF480IYA H3K27ac    Data format 
     ENCFF480XQC_polyA_plus_RNA-seq  ENCFF480XQC polyA_plus_RNA-seq    Data format 
     ENCFF488GEQ_DNase-seq  ENCFF488GEQ DNase-seq    Data format 
     ENCFF495CIX_WGBS  ENCFF495CIX WGBS    Data format 
     ENCFF504JQU_polyA_plus_RNA-seq  ENCFF504JQU polyA_plus_RNA-seq    Data format 
     ENCFF504RBA_H3K36me3  ENCFF504RBA H3K36me3    Data format 
     ENCFF510QHX_H3K4me1  ENCFF510QHX H3K4me1    Data format 
     ENCFF515FXV_H3K27me3  ENCFF515FXV H3K27me3    Data format 
     ENCFF519DND_polyA_plus_RNA-seq  ENCFF519DND polyA_plus_RNA-seq    Data format 
     ENCFF534VWZ_DNase-seq  ENCFF534VWZ DNase-seq    Data format 
     ENCFF538GPP_H3K4me3  ENCFF538GPP H3K4me3    Data format 
     ENCFF543IUX_polyA_plus_RNA-seq  ENCFF543IUX polyA_plus_RNA-seq    Data format 
     ENCFF555JIC_DNase-seq  ENCFF555JIC DNase-seq    Data format 
     ENCFF557HYB_DNase-seq  ENCFF557HYB DNase-seq    Data format 
     ENCFF565TKZ_H3K4me3  ENCFF565TKZ H3K4me3    Data format 
     ENCFF571SWC_H3K27ac  ENCFF571SWC H3K27ac    Data format 
     ENCFF581JYZ_DNase-seq  ENCFF581JYZ DNase-seq    Data format 
     ENCFF585BFY_H3K27me3  ENCFF585BFY H3K27me3    Data format 
     ENCFF586ZFE_H3K9me3  ENCFF586ZFE H3K9me3    Data format 
     ENCFF602WSX_WGBS  ENCFF602WSX WGBS    Data format 
     ENCFF604WCR_DNase-seq  ENCFF604WCR DNase-seq    Data format 
     ENCFF609WKU_H3K27ac  ENCFF609WKU H3K27ac    Data format 
     ENCFF622YZE_H3K27me3  ENCFF622YZE H3K27me3    Data format 
     ENCFF623QXD_H3K27ac  ENCFF623QXD H3K27ac    Data format 
     ENCFF631GFU_polyA_plus_RNA-seq  ENCFF631GFU polyA_plus_RNA-seq    Data format 
     ENCFF633SRN_DNase-seq  ENCFF633SRN DNase-seq    Data format 
     ENCFF636CRI_DNase-seq  ENCFF636CRI DNase-seq    Data format 
     ENCFF657FRL_DNase-seq  ENCFF657FRL DNase-seq    Data format 
     ENCFF660IHC_polyA_plus_RNA-seq  ENCFF660IHC polyA_plus_RNA-seq    Data format 
     ENCFF664UKA_H3K4me3  ENCFF664UKA H3K4me3    Data format 
     ENCFF669RTH_H3K4me3  ENCFF669RTH H3K4me3    Data format 
     ENCFF674GHB_H3K36me3  ENCFF674GHB H3K36me3    Data format 
     ENCFF688EZK_DNase-seq  ENCFF688EZK DNase-seq    Data format 
     ENCFF689FLR_polyA_plus_RNA-seq  ENCFF689FLR polyA_plus_RNA-seq    Data format 
     ENCFF694PLR_polyA_plus_RNA-seq  ENCFF694PLR polyA_plus_RNA-seq    Data format 
     ENCFF702RNS_H3K36me3  ENCFF702RNS H3K36me3    Data format 
     ENCFF710OZO_H3K4me3  ENCFF710OZO H3K4me3    Data format 
     ENCFF728QLF_polyA_plus_RNA-seq  ENCFF728QLF polyA_plus_RNA-seq    Data format 
     ENCFF746CPH_polyA_plus_RNA-seq  ENCFF746CPH polyA_plus_RNA-seq    Data format 
     ENCFF759QTQ_polyA_plus_RNA-seq  ENCFF759QTQ polyA_plus_RNA-seq    Data format 
     ENCFF770OOT_polyA_plus_RNA-seq  ENCFF770OOT polyA_plus_RNA-seq    Data format 
     ENCFF772HIG_H3K4me1  ENCFF772HIG H3K4me1    Data format 
     ENCFF773PZW_H3K27me3  ENCFF773PZW H3K27me3    Data format 
     ENCFF785HNW_H3K4me1  ENCFF785HNW H3K4me1    Data format 
     ENCFF796QJL_H3K27ac  ENCFF796QJL H3K27ac    Data format 
     ENCFF799VNT_DNase-seq  ENCFF799VNT DNase-seq    Data format 
     ENCFF803YVS_DNase-seq  ENCFF803YVS DNase-seq    Data format 
     ENCFF806GNW_H3K36me3  ENCFF806GNW H3K36me3    Data format 
     ENCFF806OQC_H3K36me3  ENCFF806OQC H3K36me3    Data format 
     ENCFF818TBB_polyA_plus_RNA-seq  ENCFF818TBB polyA_plus_RNA-seq    Data format 
     ENCFF827CLR_DNase-seq  ENCFF827CLR DNase-seq    Data format 
     ENCFF827PXJ_DNase-seq  ENCFF827PXJ DNase-seq    Data format 
     ENCFF842JVV_polyA_plus_RNA-seq  ENCFF842JVV polyA_plus_RNA-seq    Data format 
     ENCFF844TFX_polyA_plus_RNA-seq  ENCFF844TFX polyA_plus_RNA-seq    Data format 
     ENCFF846IMY_WGBS  ENCFF846IMY WGBS    Data format 
     ENCFF854JKJ_H3K4me3  ENCFF854JKJ H3K4me3    Data format 
     ENCFF882JPE_H3K4me1  ENCFF882JPE H3K4me1    Data format 
     ENCFF883GGF_H3K4me1  ENCFF883GGF H3K4me1    Data format 
     ENCFF887KZZ_polyA_plus_RNA-seq  ENCFF887KZZ polyA_plus_RNA-seq    Data format 
     ENCFF891ALA_polyA_plus_RNA-seq  ENCFF891ALA polyA_plus_RNA-seq    Data format 
     ENCFF905GLU_H3K4me3  ENCFF905GLU H3K4me3    Data format 
     ENCFF916TLI_H3K27ac  ENCFF916TLI H3K27ac    Data format 
     ENCFF920AKR_polyA_plus_RNA-seq  ENCFF920AKR polyA_plus_RNA-seq    Data format 
     ENCFF922XNR_DNase-seq  ENCFF922XNR DNase-seq    Data format 
     ENCFF925BCL_H3K27me3  ENCFF925BCL H3K27me3    Data format 
     ENCFF931BXP_polyA_plus_RNA-seq  ENCFF931BXP polyA_plus_RNA-seq    Data format 
     ENCFF936VGI_polyA_plus_RNA-seq  ENCFF936VGI polyA_plus_RNA-seq    Data format 
     ENCFF949NNQ_H3K4me3  ENCFF949NNQ H3K4me3    Data format 
     ENCFF950NLS_H3K27ac  ENCFF950NLS H3K27ac    Data format 
     ENCFF954WAV_polyA_plus_RNA-seq  ENCFF954WAV polyA_plus_RNA-seq    Data format 
     ENCFF960BJM_polyA_plus_RNA-seq  ENCFF960BJM polyA_plus_RNA-seq    Data format 
     ENCFF962GBD_DNase-seq  ENCFF962GBD DNase-seq    Data format 
     ENCFF965FUF_H3K36me3  ENCFF965FUF H3K36me3    Data format 
     ENCFF978RWQ_DNase-seq  ENCFF978RWQ DNase-seq    Data format 
     ENCFF994ADY_H3K27me3  ENCFF994ADY H3K27me3    Data format 
     ENCFF996KKA_polyA_plus_RNA-seq  ENCFF996KKA polyA_plus_RNA-seq    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:spleen
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF