Sample Summary stomach_smooth_muscle Summary Track Settings
 
Roadmap Epigenome stomach_smooth_muscle Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Overlay method:
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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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Draw y indicator lines:at y = 0.0:    at y =
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     ENCFF017UAJ_H3K9ac  ENCFF017UAJ H3K9ac    Data format 
     ENCFF055JAB_H3K36me3  ENCFF055JAB H3K36me3    Data format 
     ENCFF058QBP_H3K36me3  ENCFF058QBP H3K36me3    Data format 
     ENCFF093EFU_H3K4me3  ENCFF093EFU H3K4me3    Data format 
     ENCFF102FUG_H3K9me3  ENCFF102FUG H3K9me3    Data format 
     ENCFF112MIS_H3K4me3  ENCFF112MIS H3K4me3    Data format 
     ENCFF138XCM_H3K9me3  ENCFF138XCM H3K9me3    Data format 
     ENCFF164SJJ_H3K27me3  ENCFF164SJJ H3K27me3    Data format 
     ENCFF175PZL_H3K27ac  ENCFF175PZL H3K27ac    Data format 
     ENCFF221VOV_H3K9ac  ENCFF221VOV H3K9ac    Data format 
     ENCFF234MAC_H3K36me3  ENCFF234MAC H3K36me3    Data format 
     ENCFF260CMC_H3K4me1  ENCFF260CMC H3K4me1    Data format 
     ENCFF290HOB_H3K4me1  ENCFF290HOB H3K4me1    Data format 
     ENCFF293ERN_H3K27me3  ENCFF293ERN H3K27me3    Data format 
     ENCFF327QYA_H3K4me3  ENCFF327QYA H3K4me3    Data format 
     ENCFF330CLP_H3K9me3  ENCFF330CLP H3K9me3    Data format 
     ENCFF342JDM_H3K9me3  ENCFF342JDM H3K9me3    Data format 
     ENCFF406YNA_H3K27me3  ENCFF406YNA H3K27me3    Data format 
     ENCFF417FSJ_H3K9ac  ENCFF417FSJ H3K9ac    Data format 
     ENCFF420MJH_H3K4me1  ENCFF420MJH H3K4me1    Data format 
     ENCFF427QAM_H3K4me1  ENCFF427QAM H3K4me1    Data format 
     ENCFF436IAP_H3K4me3  ENCFF436IAP H3K4me3    Data format 
     ENCFF458TTF_H3K36me3  ENCFF458TTF H3K36me3    Data format 
     ENCFF459UPU_H3K27me3  ENCFF459UPU H3K27me3    Data format 
     ENCFF485ZEF_H3K9ac  ENCFF485ZEF H3K9ac    Data format 
     ENCFF490OLS_H3K36me3  ENCFF490OLS H3K36me3    Data format 
     ENCFF493JRG_H3K27me3  ENCFF493JRG H3K27me3    Data format 
     ENCFF526VUI_H3K27me3  ENCFF526VUI H3K27me3    Data format 
     ENCFF570QWY_H3K9ac  ENCFF570QWY H3K9ac    Data format 
     ENCFF579DHC_H3K4me3  ENCFF579DHC H3K4me3    Data format 
     ENCFF580RBF_H3K36me3  ENCFF580RBF H3K36me3    Data format 
     ENCFF607RBE_H3K4me3  ENCFF607RBE H3K4me3    Data format 
     ENCFF618VFJ_H3K9me3  ENCFF618VFJ H3K9me3    Data format 
     ENCFF665TYI_H3K27ac  ENCFF665TYI H3K27ac    Data format 
     ENCFF674ECS_H3K27ac  ENCFF674ECS H3K27ac    Data format 
     ENCFF710TJH_H3K9ac  ENCFF710TJH H3K9ac    Data format 
     ENCFF717VZT_H3K36me3  ENCFF717VZT H3K36me3    Data format 
     ENCFF721VWV_H3K9me3  ENCFF721VWV H3K9me3    Data format 
     ENCFF733YQV_H3K9me3  ENCFF733YQV H3K9me3    Data format 
     ENCFF749QAC_H3K4me3  ENCFF749QAC H3K4me3    Data format 
     ENCFF775FUL_H3K36me3  ENCFF775FUL H3K36me3    Data format 
     ENCFF797LMN_H3K27ac  ENCFF797LMN H3K27ac    Data format 
     ENCFF798QZS_H3K9ac  ENCFF798QZS H3K9ac    Data format 
     ENCFF826FFV_H3K9ac  ENCFF826FFV H3K9ac    Data format 
     ENCFF828RQS_H3K9me3  ENCFF828RQS H3K9me3    Data format 
     ENCFF860QIP_H3K27me3  ENCFF860QIP H3K27me3    Data format 
     ENCFF887LSD_H3K27me3  ENCFF887LSD H3K27me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:stomach
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF