Sample Summary substantia_nigra Summary Track Settings
 
Roadmap Epigenome substantia_nigra Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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     ENCFF011PCV_H3K4me3  ENCFF011PCV H3K4me3    Data format 
     ENCFF020XZP_H3K27ac  ENCFF020XZP H3K27ac    Data format 
     ENCFF024OMU_H3K27ac  ENCFF024OMU H3K27ac    Data format 
     ENCFF028ADR_H3K4me1  ENCFF028ADR H3K4me1    Data format 
     ENCFF028OGH_H3K4me3  ENCFF028OGH H3K4me3    Data format 
     ENCFF077YAZ_H3K9ac  ENCFF077YAZ H3K9ac    Data format 
     ENCFF101ALL_H3K9ac  ENCFF101ALL H3K9ac    Data format 
     ENCFF116GSZ_H3K36me3  ENCFF116GSZ H3K36me3    Data format 
     ENCFF174YGI_H3K9me3  ENCFF174YGI H3K9me3    Data format 
     ENCFF186SQL_H3K9me3  ENCFF186SQL H3K9me3    Data format 
     ENCFF198BHD_H3K27ac  ENCFF198BHD H3K27ac    Data format 
     ENCFF214LAT_H3K9me3  ENCFF214LAT H3K9me3    Data format 
     ENCFF214MPJ_H3K4me1  ENCFF214MPJ H3K4me1    Data format 
     ENCFF241MGV_H3K36me3  ENCFF241MGV H3K36me3    Data format 
     ENCFF256DOK_H3K9me3  ENCFF256DOK H3K9me3    Data format 
     ENCFF328XVK_H3K27me3  ENCFF328XVK H3K27me3    Data format 
     ENCFF352GLF_H3K9me3  ENCFF352GLF H3K9me3    Data format 
     ENCFF358RAF_H3K4me1  ENCFF358RAF H3K4me1    Data format 
     ENCFF361IMP_H3K27me3  ENCFF361IMP H3K27me3    Data format 
     ENCFF386WIJ_H3K9me3  ENCFF386WIJ H3K9me3    Data format 
     ENCFF389BJB_H3K27me3  ENCFF389BJB H3K27me3    Data format 
     ENCFF436LHA_H3K4me1  ENCFF436LHA H3K4me1    Data format 
     ENCFF445KNC_H3K36me3  ENCFF445KNC H3K36me3    Data format 
     ENCFF448HTE_H3K36me3  ENCFF448HTE H3K36me3    Data format 
     ENCFF455VBG_H3K27ac  ENCFF455VBG H3K27ac    Data format 
     ENCFF457RZP_H3K4me1  ENCFF457RZP H3K4me1    Data format 
     ENCFF462FHE_H3K27ac  ENCFF462FHE H3K27ac    Data format 
     ENCFF465HLY_H3K4me3  ENCFF465HLY H3K4me3    Data format 
     ENCFF499KGL_H3K4me3  ENCFF499KGL H3K4me3    Data format 
     ENCFF522ANT_H3K27ac  ENCFF522ANT H3K27ac    Data format 
     ENCFF538ACR_H3K27ac  ENCFF538ACR H3K27ac    Data format 
     ENCFF540KLW_H3K9me3  ENCFF540KLW H3K9me3    Data format 
     ENCFF548MPC_H3K4me3  ENCFF548MPC H3K4me3    Data format 
     ENCFF562LJU_H3K27me3  ENCFF562LJU H3K27me3    Data format 
     ENCFF572MVX_H3K27me3  ENCFF572MVX H3K27me3    Data format 
     ENCFF605JJH_H3K9ac  ENCFF605JJH H3K9ac    Data format 
     ENCFF614CKC_H3K27ac  ENCFF614CKC H3K27ac    Data format 
     ENCFF642SSJ_H3K27me3  ENCFF642SSJ H3K27me3    Data format 
     ENCFF680BLM_H3K4me3  ENCFF680BLM H3K4me3    Data format 
     ENCFF680EVZ_H3K27me3  ENCFF680EVZ H3K27me3    Data format 
     ENCFF750HUP_H3K27ac  ENCFF750HUP H3K27ac    Data format 
     ENCFF776MHF_H3K4me1  ENCFF776MHF H3K4me1    Data format 
     ENCFF779LJR_H3K36me3  ENCFF779LJR H3K36me3    Data format 
     ENCFF810CDQ_H3K36me3  ENCFF810CDQ H3K36me3    Data format 
     ENCFF810WOP_H3K9ac  ENCFF810WOP H3K9ac    Data format 
     ENCFF821VCM_H3K9me3  ENCFF821VCM H3K9me3    Data format 
     ENCFF858QHD_H3K4me3  ENCFF858QHD H3K4me3    Data format 
     ENCFF906XBM_H3K4me1  ENCFF906XBM H3K4me1    Data format 
     ENCFF919HKV_H3K27ac  ENCFF919HKV H3K27ac    Data format 
     ENCFF941YCV_H3K4me3  ENCFF941YCV H3K4me3    Data format 
     ENCFF942SMN_H3K27ac  ENCFF942SMN H3K27ac    Data format 
     ENCFF944KDC_H3K36me3  ENCFF944KDC H3K36me3    Data format 
     ENCFF961JWY_H3K4me1  ENCFF961JWY H3K4me1    Data format 
     ENCFF973LTF_H3K27me3  ENCFF973LTF H3K27me3    Data format 
     ENCFF976ECS_H3K27ac  ENCFF976ECS H3K27ac    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:subcutaneous_abdominal_adipose_tissue
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF