Sample Summary temporal_lobe Summary Track Settings
 
Roadmap Epigenome temporal_lobe Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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     ENCFF017HHW_H3K36me3  ENCFF017HHW H3K36me3    Data format 
     ENCFF043ZEY_H3K27ac  ENCFF043ZEY H3K27ac    Data format 
     ENCFF101PJY_H3K9me3  ENCFF101PJY H3K9me3    Data format 
     ENCFF144WMN_H3K27me3  ENCFF144WMN H3K27me3    Data format 
     ENCFF154LAJ_H3K36me3  ENCFF154LAJ H3K36me3    Data format 
     ENCFF158JUA_H3K4me3  ENCFF158JUA H3K4me3    Data format 
     ENCFF187SIO_H3K9ac  ENCFF187SIO H3K9ac    Data format 
     ENCFF194NPN_H3K27ac  ENCFF194NPN H3K27ac    Data format 
     ENCFF218KHX_H3K36me3  ENCFF218KHX H3K36me3    Data format 
     ENCFF223IPT_H3K4me1  ENCFF223IPT H3K4me1    Data format 
     ENCFF226CBX_H3K36me3  ENCFF226CBX H3K36me3    Data format 
     ENCFF251SLL_H3K4me3  ENCFF251SLL H3K4me3    Data format 
     ENCFF280KWF_H3K9me3  ENCFF280KWF H3K9me3    Data format 
     ENCFF290HDV_H3K4me3  ENCFF290HDV H3K4me3    Data format 
     ENCFF293EEX_H3K4me1  ENCFF293EEX H3K4me1    Data format 
     ENCFF297TFG_H3K9ac  ENCFF297TFG H3K9ac    Data format 
     ENCFF311OXM_H3K9me3  ENCFF311OXM H3K9me3    Data format 
     ENCFF347MTT_H3K4me3  ENCFF347MTT H3K4me3    Data format 
     ENCFF399SZC_H3K27me3  ENCFF399SZC H3K27me3    Data format 
     ENCFF402HML_H3K4me3  ENCFF402HML H3K4me3    Data format 
     ENCFF407AKM_H3K4me1  ENCFF407AKM H3K4me1    Data format 
     ENCFF415XIE_H3K4me3  ENCFF415XIE H3K4me3    Data format 
     ENCFF423GWZ_H3K27me3  ENCFF423GWZ H3K27me3    Data format 
     ENCFF433VSA_H3K4me1  ENCFF433VSA H3K4me1    Data format 
     ENCFF438WFE_H3K9me3  ENCFF438WFE H3K9me3    Data format 
     ENCFF496HWP_H3K27ac  ENCFF496HWP H3K27ac    Data format 
     ENCFF499SBY_H3K4me1  ENCFF499SBY H3K4me1    Data format 
     ENCFF528AMZ_H3K9me3  ENCFF528AMZ H3K9me3    Data format 
     ENCFF534HLN_H3K27me3  ENCFF534HLN H3K27me3    Data format 
     ENCFF558QCP_H3K27ac  ENCFF558QCP H3K27ac    Data format 
     ENCFF583MTT_H3K4me3  ENCFF583MTT H3K4me3    Data format 
     ENCFF587DBY_H3K27me3  ENCFF587DBY H3K27me3    Data format 
     ENCFF590SLF_H3K9ac  ENCFF590SLF H3K9ac    Data format 
     ENCFF598ICL_H3K27me3  ENCFF598ICL H3K27me3    Data format 
     ENCFF612KXC_H3K36me3  ENCFF612KXC H3K36me3    Data format 
     ENCFF639TZJ_H3K4me1  ENCFF639TZJ H3K4me1    Data format 
     ENCFF676ZJY_H3K9me3  ENCFF676ZJY H3K9me3    Data format 
     ENCFF682YSX_H3K27ac  ENCFF682YSX H3K27ac    Data format 
     ENCFF692RJD_H3K9ac  ENCFF692RJD H3K9ac    Data format 
     ENCFF695JDX_H3K4me3  ENCFF695JDX H3K4me3    Data format 
     ENCFF698ZQK_H3K4me1  ENCFF698ZQK H3K4me1    Data format 
     ENCFF758LAA_H3K4me1  ENCFF758LAA H3K4me1    Data format 
     ENCFF762XSC_H3K27ac  ENCFF762XSC H3K27ac    Data format 
     ENCFF783TGQ_H3K36me3  ENCFF783TGQ H3K36me3    Data format 
     ENCFF796DEV_H3K9me3  ENCFF796DEV H3K9me3    Data format 
     ENCFF798EMZ_H3K27me3  ENCFF798EMZ H3K27me3    Data format 
     ENCFF841DOI_H3K27me3  ENCFF841DOI H3K27me3    Data format 
     ENCFF853GMX_H3K27ac  ENCFF853GMX H3K27ac    Data format 
     ENCFF946RTU_H3K9me3  ENCFF946RTU H3K9me3    Data format 
     ENCFF960LHQ_H3K36me3  ENCFF960LHQ H3K36me3    Data format 
     ENCFF973EOS_H3K27ac  ENCFF973EOS H3K27ac    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:T-helper_17_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF