Sample Summary thymus Summary Track Settings
 
Roadmap Epigenome thymus Summary

Track collection: Sample Summary

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All subtracks:
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     ENCFF015BTM_H3K4me1  ENCFF015BTM H3K4me1    Data format 
     ENCFF020IPM_H3K36me3  ENCFF020IPM H3K36me3    Data format 
     ENCFF028RKZ_polyA_plus_RNA-seq  ENCFF028RKZ polyA_plus_RNA-seq    Data format 
     ENCFF029LVQ_WGBS  ENCFF029LVQ WGBS    Data format 
     ENCFF033FKZ_H3K4me3  ENCFF033FKZ H3K4me3    Data format 
     ENCFF068LEG_polyA_plus_RNA-seq  ENCFF068LEG polyA_plus_RNA-seq    Data format 
     ENCFF101MRT_DNase-seq  ENCFF101MRT DNase-seq    Data format 
     ENCFF106CEF_H3K27ac  ENCFF106CEF H3K27ac    Data format 
     ENCFF113QTH_polyA_plus_RNA-seq  ENCFF113QTH polyA_plus_RNA-seq    Data format 
     ENCFF113WVU_polyA_plus_RNA-seq  ENCFF113WVU polyA_plus_RNA-seq    Data format 
     ENCFF119NGU_polyA_plus_RNA-seq  ENCFF119NGU polyA_plus_RNA-seq    Data format 
     ENCFF121ZWZ_polyA_plus_RNA-seq  ENCFF121ZWZ polyA_plus_RNA-seq    Data format 
     ENCFF140BNH_WGBS  ENCFF140BNH WGBS    Data format 
     ENCFF149OAK_WGBS  ENCFF149OAK WGBS    Data format 
     ENCFF168NLB_polyA_plus_RNA-seq  ENCFF168NLB polyA_plus_RNA-seq    Data format 
     ENCFF172TVE_DNase-seq  ENCFF172TVE DNase-seq    Data format 
     ENCFF199BDG_polyA_plus_RNA-seq  ENCFF199BDG polyA_plus_RNA-seq    Data format 
     ENCFF203ACG_DNase-seq  ENCFF203ACG DNase-seq    Data format 
     ENCFF205JZC_H3K36me3  ENCFF205JZC H3K36me3    Data format 
     ENCFF208JKW_polyA_plus_RNA-seq  ENCFF208JKW polyA_plus_RNA-seq    Data format 
     ENCFF208RND_H3K27me3  ENCFF208RND H3K27me3    Data format 
     ENCFF260CLC_H3K36me3  ENCFF260CLC H3K36me3    Data format 
     ENCFF266AHD_H3K9me3  ENCFF266AHD H3K9me3    Data format 
     ENCFF266GSU_H3K9me3  ENCFF266GSU H3K9me3    Data format 
     ENCFF272PJK_H3K36me3  ENCFF272PJK H3K36me3    Data format 
     ENCFF291OIO_H3K27ac  ENCFF291OIO H3K27ac    Data format 
     ENCFF294TTY_H3K27ac  ENCFF294TTY H3K27ac    Data format 
     ENCFF301RGB_H3K9me3  ENCFF301RGB H3K9me3    Data format 
     ENCFF303BPD_H3K27ac  ENCFF303BPD H3K27ac    Data format 
     ENCFF303PLE_H3K4me3  ENCFF303PLE H3K4me3    Data format 
     ENCFF315BTX_polyA_plus_RNA-seq  ENCFF315BTX polyA_plus_RNA-seq    Data format 
     ENCFF343BVU_polyA_plus_RNA-seq  ENCFF343BVU polyA_plus_RNA-seq    Data format 
     ENCFF344PHI_H3K27me3  ENCFF344PHI H3K27me3    Data format 
     ENCFF350RPE_DNase-seq  ENCFF350RPE DNase-seq    Data format 
     ENCFF353EKI_DNase-seq  ENCFF353EKI DNase-seq    Data format 
     ENCFF367DUO_polyA_plus_RNA-seq  ENCFF367DUO polyA_plus_RNA-seq    Data format 
     ENCFF373JYB_polyA_plus_RNA-seq  ENCFF373JYB polyA_plus_RNA-seq    Data format 
     ENCFF378ZCH_H3K27me3  ENCFF378ZCH H3K27me3    Data format 
     ENCFF382VBF_polyA_plus_RNA-seq  ENCFF382VBF polyA_plus_RNA-seq    Data format 
     ENCFF383FVK_H3K36me3  ENCFF383FVK H3K36me3    Data format 
     ENCFF394AIF_H3K4me3  ENCFF394AIF H3K4me3    Data format 
     ENCFF397QED_H3K4me1  ENCFF397QED H3K4me1    Data format 
     ENCFF403KRP_H3K4me3  ENCFF403KRP H3K4me3    Data format 
     ENCFF405RFM_DNase-seq  ENCFF405RFM DNase-seq    Data format 
     ENCFF418XFA_H3K27ac  ENCFF418XFA H3K27ac    Data format 
     ENCFF434SMA_H3K4me1  ENCFF434SMA H3K4me1    Data format 
     ENCFF460ASW_H3K27ac  ENCFF460ASW H3K27ac    Data format 
     ENCFF482YAE_polyA_plus_RNA-seq  ENCFF482YAE polyA_plus_RNA-seq    Data format 
     ENCFF485OJF_H3K4me1  ENCFF485OJF H3K4me1    Data format 
     ENCFF486PSM_H3K4me1  ENCFF486PSM H3K4me1    Data format 
     ENCFF522TSE_H3K27me3  ENCFF522TSE H3K27me3    Data format 
     ENCFF527VFR_DNase-seq  ENCFF527VFR DNase-seq    Data format 
     ENCFF538SYZ_DNase-seq  ENCFF538SYZ DNase-seq    Data format 
     ENCFF539SCR_H3K36me3  ENCFF539SCR H3K36me3    Data format 
     ENCFF540IIL_polyA_plus_RNA-seq  ENCFF540IIL polyA_plus_RNA-seq    Data format 
     ENCFF563TJP_DNase-seq  ENCFF563TJP DNase-seq    Data format 
     ENCFF570ZTR_polyA_plus_RNA-seq  ENCFF570ZTR polyA_plus_RNA-seq    Data format 
     ENCFF584VBB_H3K4me3  ENCFF584VBB H3K4me3    Data format 
     ENCFF591BZF_WGBS  ENCFF591BZF WGBS    Data format 
     ENCFF593PUQ_H3K4me1  ENCFF593PUQ H3K4me1    Data format 
     ENCFF600SMV_H3K9me3  ENCFF600SMV H3K9me3    Data format 
     ENCFF604OZO_H3K4me3  ENCFF604OZO H3K4me3    Data format 
     ENCFF619PTY_DNase-seq  ENCFF619PTY DNase-seq    Data format 
     ENCFF625UJA_polyA_plus_RNA-seq  ENCFF625UJA polyA_plus_RNA-seq    Data format 
     ENCFF651EWX_H3K27me3  ENCFF651EWX H3K27me3    Data format 
     ENCFF653TIC_H3K27me3  ENCFF653TIC H3K27me3    Data format 
     ENCFF666BIK_polyA_plus_RNA-seq  ENCFF666BIK polyA_plus_RNA-seq    Data format 
     ENCFF688GCI_H3K4me1  ENCFF688GCI H3K4me1    Data format 
     ENCFF689ZKP_DNase-seq  ENCFF689ZKP DNase-seq    Data format 
     ENCFF710VGE_H3K4me1  ENCFF710VGE H3K4me1    Data format 
     ENCFF721IYP_DNase-seq  ENCFF721IYP DNase-seq    Data format 
     ENCFF740UPD_H3K27ac  ENCFF740UPD H3K27ac    Data format 
     ENCFF753POK_H3K9me3  ENCFF753POK H3K9me3    Data format 
     ENCFF754BNN_H3K27ac  ENCFF754BNN H3K27ac    Data format 
     ENCFF758QAV_polyA_plus_RNA-seq  ENCFF758QAV polyA_plus_RNA-seq    Data format 
     ENCFF779WRD_H3K4me3  ENCFF779WRD H3K4me3    Data format 
     ENCFF781MYF_H3K36me3  ENCFF781MYF H3K36me3    Data format 
     ENCFF783ZKX_DNase-seq  ENCFF783ZKX DNase-seq    Data format 
     ENCFF801WCC_H3K9me3  ENCFF801WCC H3K9me3    Data format 
     ENCFF831NRZ_H3K27me3  ENCFF831NRZ H3K27me3    Data format 
     ENCFF832AOK_H3K27me3  ENCFF832AOK H3K27me3    Data format 
     ENCFF840VTO_polyA_plus_RNA-seq  ENCFF840VTO polyA_plus_RNA-seq    Data format 
     ENCFF845WGL_DNase-seq  ENCFF845WGL DNase-seq    Data format 
     ENCFF851OVK_polyA_plus_RNA-seq  ENCFF851OVK polyA_plus_RNA-seq    Data format 
     ENCFF858RAV_DNase-seq  ENCFF858RAV DNase-seq    Data format 
     ENCFF870SBT_H3K4me3  ENCFF870SBT H3K4me3    Data format 
     ENCFF884TVR_polyA_plus_RNA-seq  ENCFF884TVR polyA_plus_RNA-seq    Data format 
     ENCFF890UZH_polyA_plus_RNA-seq  ENCFF890UZH polyA_plus_RNA-seq    Data format 
     ENCFF900MLZ_polyA_plus_RNA-seq  ENCFF900MLZ polyA_plus_RNA-seq    Data format 
     ENCFF901BSJ_H3K9me3  ENCFF901BSJ H3K9me3    Data format 
     ENCFF921GFL_DNase-seq  ENCFF921GFL DNase-seq    Data format 
     ENCFF927JLC_H3K36me3  ENCFF927JLC H3K36me3    Data format 
     ENCFF936MHE_DNase-seq  ENCFF936MHE DNase-seq    Data format 
     ENCFF943HVM_H3K9me3  ENCFF943HVM H3K9me3    Data format 
     ENCFF946IGA_polyA_plus_RNA-seq  ENCFF946IGA polyA_plus_RNA-seq    Data format 
     ENCFF966NEB_polyA_plus_RNA-seq  ENCFF966NEB polyA_plus_RNA-seq    Data format 
     ENCFF981ZHS_DNase-seq  ENCFF981ZHS DNase-seq    Data format 
     ENCFF991RKM_polyA_plus_RNA-seq  ENCFF991RKM polyA_plus_RNA-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:temporal_lobe
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF