Sample Summary trophoblast Summary Track Settings
 
Roadmap Epigenome trophoblast Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

Display mode:       Reset to defaults

Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF017YIK_polyA_plus_RNA-seq  ENCFF017YIK polyA_plus_RNA-seq    Data format 
     ENCFF023VHG_microRNA-seq  ENCFF023VHG microRNA-seq    Data format 
     ENCFF040IBX_H3K9me3  ENCFF040IBX H3K9me3    Data format 
     ENCFF045XTR_H3K36me3  ENCFF045XTR H3K36me3    Data format 
     ENCFF069DWA_H3K27ac  ENCFF069DWA H3K27ac    Data format 
     ENCFF073GYV_H3K9me3  ENCFF073GYV H3K9me3    Data format 
     ENCFF076PLX_H3K27me3  ENCFF076PLX H3K27me3    Data format 
     ENCFF078IVT_polyA_plus_RNA-seq  ENCFF078IVT polyA_plus_RNA-seq    Data format 
     ENCFF095ITH_H3K36me3  ENCFF095ITH H3K36me3    Data format 
     ENCFF119OPO_H3K27ac  ENCFF119OPO H3K27ac    Data format 
     ENCFF121FLF_polyA_plus_RNA-seq  ENCFF121FLF polyA_plus_RNA-seq    Data format 
     ENCFF124FDL_polyA_plus_RNA-seq  ENCFF124FDL polyA_plus_RNA-seq    Data format 
     ENCFF145BOT_H3K27me3  ENCFF145BOT H3K27me3    Data format 
     ENCFF147TZM_polyA_plus_RNA-seq  ENCFF147TZM polyA_plus_RNA-seq    Data format 
     ENCFF156YWB_H3K27ac  ENCFF156YWB H3K27ac    Data format 
     ENCFF172DYL_H3K4me1  ENCFF172DYL H3K4me1    Data format 
     ENCFF188YMA_H3K27me3  ENCFF188YMA H3K27me3    Data format 
     ENCFF196GXH_polyA_plus_RNA-seq  ENCFF196GXH polyA_plus_RNA-seq    Data format 
     ENCFF210SFK_H3K27ac  ENCFF210SFK H3K27ac    Data format 
     ENCFF215LEC_microRNA-seq  ENCFF215LEC microRNA-seq    Data format 
     ENCFF224ALA_polyA_plus_RNA-seq  ENCFF224ALA polyA_plus_RNA-seq    Data format 
     ENCFF235OKK_H3K27ac  ENCFF235OKK H3K27ac    Data format 
     ENCFF245YKW_polyA_plus_RNA-seq  ENCFF245YKW polyA_plus_RNA-seq    Data format 
     ENCFF257SDT_H3K9me3  ENCFF257SDT H3K9me3    Data format 
     ENCFF264TTT_H3K27ac  ENCFF264TTT H3K27ac    Data format 
     ENCFF283VUJ_H3K36me3  ENCFF283VUJ H3K36me3    Data format 
     ENCFF303XFH_H3K27ac  ENCFF303XFH H3K27ac    Data format 
     ENCFF311ZOE_microRNA-seq  ENCFF311ZOE microRNA-seq    Data format 
     ENCFF323PWY_microRNA-seq  ENCFF323PWY microRNA-seq    Data format 
     ENCFF379NNH_microRNA-seq  ENCFF379NNH microRNA-seq    Data format 
     ENCFF382UNZ_polyA_plus_RNA-seq  ENCFF382UNZ polyA_plus_RNA-seq    Data format 
     ENCFF385CCQ_H3K4me1  ENCFF385CCQ H3K4me1    Data format 
     ENCFF419XRY_polyA_plus_RNA-seq  ENCFF419XRY polyA_plus_RNA-seq    Data format 
     ENCFF425UOP_H3K9me3  ENCFF425UOP H3K9me3    Data format 
     ENCFF439LQI_polyA_plus_RNA-seq  ENCFF439LQI polyA_plus_RNA-seq    Data format 
     ENCFF490BII_H3K36me3  ENCFF490BII H3K36me3    Data format 
     ENCFF511UUW_microRNA-seq  ENCFF511UUW microRNA-seq    Data format 
     ENCFF526MDE_microRNA-seq  ENCFF526MDE microRNA-seq    Data format 
     ENCFF527BJD_polyA_plus_RNA-seq  ENCFF527BJD polyA_plus_RNA-seq    Data format 
     ENCFF540PFC_polyA_plus_RNA-seq  ENCFF540PFC polyA_plus_RNA-seq    Data format 
     ENCFF548PVT_H3K4me1  ENCFF548PVT H3K4me1    Data format 
     ENCFF561TSF_H3K4me1  ENCFF561TSF H3K4me1    Data format 
     ENCFF566GVW_H3K9me3  ENCFF566GVW H3K9me3    Data format 
     ENCFF599HPZ_H3K27me3  ENCFF599HPZ H3K27me3    Data format 
     ENCFF602FLD_H3K9me3  ENCFF602FLD H3K9me3    Data format 
     ENCFF633AWV_H3K27me3  ENCFF633AWV H3K27me3    Data format 
     ENCFF683KUC_H3K27me3  ENCFF683KUC H3K27me3    Data format 
     ENCFF691GFC_H3K36me3  ENCFF691GFC H3K36me3    Data format 
     ENCFF722ASP_H3K4me1  ENCFF722ASP H3K4me1    Data format 
     ENCFF728AHM_polyA_plus_RNA-seq  ENCFF728AHM polyA_plus_RNA-seq    Data format 
     ENCFF743MQO_H3K4me1  ENCFF743MQO H3K4me1    Data format 
     ENCFF744LNK_polyA_plus_RNA-seq  ENCFF744LNK polyA_plus_RNA-seq    Data format 
     ENCFF809WIF_microRNA-seq  ENCFF809WIF microRNA-seq    Data format 
     ENCFF814NAH_microRNA-seq  ENCFF814NAH microRNA-seq    Data format 
     ENCFF846WHW_H3K9me3  ENCFF846WHW H3K9me3    Data format 
     ENCFF853LGB_H3K9me3  ENCFF853LGB H3K9me3    Data format 
     ENCFF853WGN_H3K36me3  ENCFF853WGN H3K36me3    Data format 
     ENCFF863HHM_H3K36me3  ENCFF863HHM H3K36me3    Data format 
     ENCFF881NZD_H3K27ac  ENCFF881NZD H3K27ac    Data format 
     ENCFF881UNX_H3K27me3  ENCFF881UNX H3K27me3    Data format 
     ENCFF885RJP_microRNA-seq  ENCFF885RJP microRNA-seq    Data format 
     ENCFF916XFM_H3K4me1  ENCFF916XFM H3K4me1    Data format 
     ENCFF947BRS_microRNA-seq  ENCFF947BRS microRNA-seq    Data format 
     ENCFF948WAI_H3K36me3  ENCFF948WAI H3K36me3    Data format 
     ENCFF949GYG_H3K4me1  ENCFF949GYG H3K4me1    Data format 
     ENCFF968XJQ_H3K27me3  ENCFF968XJQ H3K27me3    Data format 
     ENCFF982PVE_microRNA-seq  ENCFF982PVE microRNA-seq    Data format 
    
Metadata:
Assay:WGBS
OutputType:plus_strand_methylation_state_at_CpG
Sample:thymus
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF