Sample Summary urinary_bladder Summary Track Settings
 
Roadmap Epigenome urinary_bladder Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
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All subtracks:
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     ENCFF031UJK_H3K36me3  ENCFF031UJK H3K36me3    Data format 
     ENCFF039NIU_H3K27ac  ENCFF039NIU H3K27ac    Data format 
     ENCFF055YXU_H3K4me1  ENCFF055YXU H3K4me1    Data format 
     ENCFF089KQW_H3K4me3  ENCFF089KQW H3K4me3    Data format 
     ENCFF226ASX_H3K4me1  ENCFF226ASX H3K4me1    Data format 
     ENCFF263ZQE_H3K27ac  ENCFF263ZQE H3K27ac    Data format 
     ENCFF291EKF_polyA_plus_RNA-seq  ENCFF291EKF polyA_plus_RNA-seq    Data format 
     ENCFF376MSU_polyA_plus_RNA-seq  ENCFF376MSU polyA_plus_RNA-seq    Data format 
     ENCFF469KTC_H3K4me3  ENCFF469KTC H3K4me3    Data format 
     ENCFF489NKI_H3K36me3  ENCFF489NKI H3K36me3    Data format 
     ENCFF533RNT_H3K4me1  ENCFF533RNT H3K4me1    Data format 
     ENCFF539VSU_H3K36me3  ENCFF539VSU H3K36me3    Data format 
     ENCFF545KUT_H3K4me1  ENCFF545KUT H3K4me1    Data format 
     ENCFF618CCP_polyA_plus_RNA-seq  ENCFF618CCP polyA_plus_RNA-seq    Data format 
     ENCFF627OFU_H3K27ac  ENCFF627OFU H3K27ac    Data format 
     ENCFF755ULT_H3K36me3  ENCFF755ULT H3K36me3    Data format 
     ENCFF778BHB_H3K4me3  ENCFF778BHB H3K4me3    Data format 
     ENCFF828JSQ_H3K4me3  ENCFF828JSQ H3K4me3    Data format 
     ENCFF881RLC_H3K27ac  ENCFF881RLC H3K27ac    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:minus_strand_signal_of_unique_reads
Sample:UCSF-4
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF