Assay Summary small_RNA-seq Summary Track Settings
 
Roadmap Epigenome small_RNA-seq Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF038MPS_H1  ENCFF038MPS H1 by small_RNA-seq    Data format 
     ENCFF044IQE_mesendoderm  ENCFF044IQE mesendoderm by small_RNA-seq    Data format 
     ENCFF062WTO_neuronal_stem_cell  ENCFF062WTO neuronal_stem_cell by small_RNA-seq    Data format 
     ENCFF070FAA_neuronal_stem_cell  ENCFF070FAA neuronal_stem_cell by small_RNA-seq    Data format 
     ENCFF103UXS_H1  ENCFF103UXS H1 by small_RNA-seq    Data format 
     ENCFF120GUW_trophoblast_cell  ENCFF120GUW trophoblast_cell by small_RNA-seq    Data format 
     ENCFF122OQJ_mesenchymal_stem_cell  ENCFF122OQJ mesenchymal_stem_cell by small_RNA-seq    Data format 
     ENCFF128ESU_neuronal_stem_cell  ENCFF128ESU neuronal_stem_cell by small_RNA-seq    Data format 
     ENCFF167WMQ_trophoblast_cell  ENCFF167WMQ trophoblast_cell by small_RNA-seq    Data format 
     ENCFF181NTU_mesendoderm  ENCFF181NTU mesendoderm by small_RNA-seq    Data format 
     ENCFF202LNC_mesenchymal_stem_cell  ENCFF202LNC mesenchymal_stem_cell by small_RNA-seq    Data format 
     ENCFF203GHK_H1  ENCFF203GHK H1 by small_RNA-seq    Data format 
     ENCFF218BWP_mesendoderm  ENCFF218BWP mesendoderm by small_RNA-seq    Data format 
     ENCFF225OOX_H1  ENCFF225OOX H1 by small_RNA-seq    Data format 
     ENCFF240BKZ_mesenchymal_stem_cell  ENCFF240BKZ mesenchymal_stem_cell by small_RNA-seq    Data format 
     ENCFF251KYU_trophoblast_cell  ENCFF251KYU trophoblast_cell by small_RNA-seq    Data format 
     ENCFF293EXG_H1  ENCFF293EXG H1 by small_RNA-seq    Data format 
     ENCFF295SQB_mesenchymal_stem_cell  ENCFF295SQB mesenchymal_stem_cell by small_RNA-seq    Data format 
     ENCFF297RQL_trophoblast_cell  ENCFF297RQL trophoblast_cell by small_RNA-seq    Data format 
     ENCFF302ORY_H1  ENCFF302ORY H1 by small_RNA-seq    Data format 
     ENCFF330ZJH_mesenchymal_stem_cell  ENCFF330ZJH mesenchymal_stem_cell by small_RNA-seq    Data format 
     ENCFF363ILM_trophoblast_cell  ENCFF363ILM trophoblast_cell by small_RNA-seq    Data format 
     ENCFF378RPI_neuronal_stem_cell  ENCFF378RPI neuronal_stem_cell by small_RNA-seq    Data format 
     ENCFF441TZL_trophoblast_cell  ENCFF441TZL trophoblast_cell by small_RNA-seq    Data format 
     ENCFF453LWO_H1  ENCFF453LWO H1 by small_RNA-seq    Data format 
     ENCFF489EZZ_mesenchymal_stem_cell  ENCFF489EZZ mesenchymal_stem_cell by small_RNA-seq    Data format 
     ENCFF640DMY_mesendoderm  ENCFF640DMY mesendoderm by small_RNA-seq    Data format 
     ENCFF643CEI_mesendoderm  ENCFF643CEI mesendoderm by small_RNA-seq    Data format 
     ENCFF708PDI_trophoblast_cell  ENCFF708PDI trophoblast_cell by small_RNA-seq    Data format 
     ENCFF822MWQ_H1  ENCFF822MWQ H1 by small_RNA-seq    Data format 
     ENCFF831IWI_neuronal_stem_cell  ENCFF831IWI neuronal_stem_cell by small_RNA-seq    Data format 
     ENCFF842BMA_neuronal_stem_cell  ENCFF842BMA neuronal_stem_cell by small_RNA-seq    Data format 
     ENCFF868EOM_mesendoderm  ENCFF868EOM mesendoderm by small_RNA-seq    Data format 
     ENCFF907THR_mesendoderm  ENCFF907THR mesendoderm by small_RNA-seq    Data format 
     ENCFF918JMV_mesenchymal_stem_cell  ENCFF918JMV mesenchymal_stem_cell by small_RNA-seq    Data format 
     ENCFF919NAM_neuronal_stem_cell  ENCFF919NAM neuronal_stem_cell by small_RNA-seq    Data format 
     ENCFF935SFW_mesendoderm  ENCFF935SFW mesendoderm by small_RNA-seq    Data format 
     ENCFF946TMJ_mesenchymal_stem_cell  ENCFF946TMJ mesenchymal_stem_cell by small_RNA-seq    Data format 
     ENCFF957YAN_neuronal_stem_cell  ENCFF957YAN neuronal_stem_cell by small_RNA-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:minus_strand_signal_of_all_reads
Sample:urinary_bladder
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF