Assay Summary total_RNA-seq Summary Track Settings
 
Roadmap Epigenome total_RNA-seq Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF118SFH_IMR-90  ENCFF118SFH IMR-90 by total_RNA-seq    Data format 
     ENCFF153MWV_IMR-90  ENCFF153MWV IMR-90 by total_RNA-seq    Data format 
     ENCFF159ZJC_IMR-90  ENCFF159ZJC IMR-90 by total_RNA-seq    Data format 
     ENCFF174UWF_H1  ENCFF174UWF H1 by total_RNA-seq    Data format 
     ENCFF188MTB_IMR-90  ENCFF188MTB IMR-90 by total_RNA-seq    Data format 
     ENCFF257QQB_H1  ENCFF257QQB H1 by total_RNA-seq    Data format 
     ENCFF304EHG_H1  ENCFF304EHG H1 by total_RNA-seq    Data format 
     ENCFF307LLA_H1  ENCFF307LLA H1 by total_RNA-seq    Data format 
     ENCFF393HJI_IMR-90  ENCFF393HJI IMR-90 by total_RNA-seq    Data format 
     ENCFF433DSZ_IMR-90  ENCFF433DSZ IMR-90 by total_RNA-seq    Data format 
     ENCFF499YZS_H1  ENCFF499YZS H1 by total_RNA-seq    Data format 
     ENCFF526FCK_H1  ENCFF526FCK H1 by total_RNA-seq    Data format 
     ENCFF536EYJ_IMR-90  ENCFF536EYJ IMR-90 by total_RNA-seq    Data format 
     ENCFF569VDS_H1  ENCFF569VDS H1 by total_RNA-seq    Data format 
     ENCFF716EFJ_H1  ENCFF716EFJ H1 by total_RNA-seq    Data format 
    
Metadata:
Assay:small_RNA-seq
OutputType:minus_strand_signal_of_unique_reads
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF