By Assay H2AK9ac Track Settings
 
H2AK9ac tracks

Track collection: Roadmap data by assay

+  Description
+  All tracks in this collection (37)

Maximum display mode:       Reset to defaults   
Select views (Help):
Coverage      
Select subtracks by sample type:
  Sample Type IMR-90 
List subtracks: only selected/visible    all    ()
  Sample Type↓1   Track Name↓2  
dense
 IMR-90  ENCFF047UWY ChIP-seq H2AK9ac    Data format 
dense
 IMR-90  ENCFF063UMO ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF111BHR ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF181MDU ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF231HAP ChIP-seq H2AK9ac    Data format 
dense
 IMR-90  ENCFF310LJE ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF343QAU ChIP-seq H2AK9ac    Data format 
dense
 IMR-90  ENCFF366LIC ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF409VSF ChIP-seq H2AK9ac    Data format 
dense
 IMR-90  ENCFF421TNP ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF475YJV ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF615GEG ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF625ZJC ChIP-seq H2AK9ac    Data format 
dense
 IMR-90  ENCFF635OXE ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF656BJE ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF725IGL ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF752AQC ChIP-seq H2AK9ac    Data format 
dense
 Configure 		 IMR-90  ENCFF809TDF ChIP-seq H2AK9ac    Data format 
dense
 IMR-90  ENCFF849SWR ChIP-seq H2AK9ac    Data format 
dense
 IMR-90  ENCFF907GLH ChIP-seq H2AK9ac    Data format 
    
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF