By Sample mole Track Settings
 
mole tracks

Track collection: Roadmap data by sample

+  Description
+  All tracks in this collection (133)

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  Assay Type polyA plus RNA-seq  microRNA-seq 
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dense
 Configure 		 microRNA-seq  ENCFF468ENJ mole microRNA-seq    Data format 
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 Configure 		 microRNA-seq  ENCFF600MIO mole microRNA-seq    Data format 
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 Configure 		 microRNA-seq  ENCFF914HZA mole microRNA-seq    Data format 
dense
 Configure 		 microRNA-seq  ENCFF972HOC mole microRNA-seq    Data format 
dense
 Configure 		 polyA plus RNA-seq  ENCFF005IXP mole polyA_plus_RNA-seq    Data format 
dense
 Configure 		 polyA plus RNA-seq  ENCFF060YSG mole polyA_plus_RNA-seq    Data format 
dense
 Configure 		 polyA plus RNA-seq  ENCFF270NPZ mole polyA_plus_RNA-seq    Data format 
dense
 Configure 		 polyA plus RNA-seq  ENCFF986WHE mole polyA_plus_RNA-seq    Data format 
    
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF