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testis tracks

Track collection: Roadmap data by sample

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+  All tracks in this collection (133)

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 DNase-seq  ENCFF027JXG testis DNase-seq    Data format 
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 Configure 		 DNase-seq  ENCFF037YBR testis DNase-seq    Data format 
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 DNase-seq  ENCFF039TOC testis DNase-seq    Data format 
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 Configure 		 DNase-seq  ENCFF047EHA testis DNase-seq    Data format 
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 DNase-seq  ENCFF062IYK testis DNase-seq    Data format 
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 DNase-seq  ENCFF177WVM testis DNase-seq    Data format 
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 DNase-seq  ENCFF185PJA testis DNase-seq    Data format 
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 DNase-seq  ENCFF194VEP testis DNase-seq    Data format 
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 DNase-seq  ENCFF200DFC testis DNase-seq    Data format 
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 DNase-seq  ENCFF228XWS testis DNase-seq    Data format 
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 DNase-seq  ENCFF350KAV testis DNase-seq    Data format 
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 Configure 		 DNase-seq  ENCFF366YAV testis DNase-seq    Data format 
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 DNase-seq  ENCFF430HKU testis DNase-seq    Data format 
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 DNase-seq  ENCFF437MPX testis DNase-seq    Data format 
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 DNase-seq  ENCFF490EZS testis DNase-seq    Data format 
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 DNase-seq  ENCFF518JWH testis DNase-seq    Data format 
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 DNase-seq  ENCFF635YIG testis DNase-seq    Data format 
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 DNase-seq  ENCFF638WGS testis DNase-seq    Data format 
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 Configure 		 DNase-seq  ENCFF639ZOF testis DNase-seq    Data format 
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 DNase-seq  ENCFF692XFP testis DNase-seq    Data format 
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 DNase-seq  ENCFF746SEI testis DNase-seq    Data format 
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 DNase-seq  ENCFF795RJQ testis DNase-seq    Data format 
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 DNase-seq  ENCFF821XXO testis DNase-seq    Data format 
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 DNase-seq  ENCFF909DPC testis DNase-seq    Data format 
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 Configure 		 polyA plus RNA-seq  ENCFF043AMA testis polyA_plus_RNA-seq    Data format 
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 Configure 		 polyA plus RNA-seq  ENCFF186YUS testis polyA_plus_RNA-seq    Data format 
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 Configure 		 polyA plus RNA-seq  ENCFF193HUI testis polyA_plus_RNA-seq    Data format 
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 Configure 		 polyA plus RNA-seq  ENCFF339JQP testis polyA_plus_RNA-seq    Data format 
    
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF