By Sample Tracks
 
Roadmap data by sample tracks

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adipocyte  adipocyte tracks  
adipose_tissue  adipose_tissue tracks  
adrenal_gland  adrenal_gland tracks  
amnion  amnion tracks  
angular_gyrus  angular_gyrus tracks  
aorta  aorta tracks  
area_11_of_Brodmann  area_11_of_Brodmann tracks  
astrocyte  astrocyte tracks  
B_cell  B_cell tracks  
brain  brain tracks  
caudate_nucleus  caudate_nucleus tracks  
CD14-positive_monocyte  CD14-positive_monocyte tracks  
CD4-positive,_alpha-beta_memory_T_cell  CD4-positive,_alpha-beta_memory_T_cell tracks  
CD4-positive,_alpha-beta_T_cell  CD4-positive,_alpha-beta_T_cell tracks  
CD4-positive,_CD25-positive,_alpha-beta_regulatory_T_cell  CD4-positive,_CD25-positive,_alpha-beta_regulatory_T_cell tracks  
CD8-positive,_alpha-beta_memory_T_cell  CD8-positive,_alpha-beta_memory_T_cell tracks  
CD8-positive,_alpha-beta_T_cell  CD8-positive,_alpha-beta_T_cell tracks  
cerebellum  cerebellum tracks  
chorion  chorion tracks  
chorionic_villus  chorionic_villus tracks  
cingulate_gyrus  cingulate_gyrus tracks  
colonic_mucosa  colonic_mucosa tracks  
common_myeloid_progenitor,_CD34-positive  common_myeloid_progenitor,_CD34-positive tracks  
duodenal_mucosa  duodenal_mucosa tracks  
ectodermal_cell  ectodermal_cell tracks  
effector_memory_CD4-positive,_alpha-beta_T_cell  effector_memory_CD4-positive,_alpha-beta_T_cell tracks  
endocrine_pancreas  endocrine_pancreas tracks  
endodermal_cell  endodermal_cell tracks  
ES-I3  ES-I3 tracks  
esophagus  esophagus tracks  
fibroblast_of_breast  fibroblast_of_breast tracks  
fibroblast_of_skin_of_abdomen  fibroblast_of_skin_of_abdomen tracks  
fibroblast_of_skin_of_back  fibroblast_of_skin_of_back tracks  
fibroblast_of_skin_of_left_biceps  fibroblast_of_skin_of_left_biceps tracks  
fibroblast_of_skin_of_left_quadriceps  fibroblast_of_skin_of_left_quadriceps tracks  
fibroblast_of_skin_of_right_biceps  fibroblast_of_skin_of_right_biceps tracks  
fibroblast_of_skin_of_right_quadriceps  fibroblast_of_skin_of_right_quadriceps tracks  
fibroblast_of_skin_of_scalp  fibroblast_of_skin_of_scalp tracks  
fibroblast_of_upper_back_skin  fibroblast_of_upper_back_skin tracks  
forelimb_muscle  forelimb_muscle tracks  
foreskin_fibroblast  foreskin_fibroblast tracks  
foreskin_keratinocyte  foreskin_keratinocyte tracks  
foreskin_melanocyte  foreskin_melanocyte tracks  
germinal_matrix  germinal_matrix tracks  
H1  H1 tracks  
H7  H7 tracks  
H9  H9 tracks  
heart  heart tracks  
heart_left_ventricle  heart_left_ventricle tracks  
heart_right_ventricle  heart_right_ventricle tracks  
hematopoietic_multipotent_progenitor_cell  hematopoietic_multipotent_progenitor_cell tracks  
hindlimb_muscle  hindlimb_muscle tracks  
HUES48  HUES48 tracks  
HUES6  HUES6 tracks  
HUES64  HUES64 tracks  
IMR-90  IMR-90 tracks  
insula  insula tracks  
iPS-11a  iPS-11a tracks  
iPS-15b  iPS-15b tracks  
iPS-18a  iPS-18a tracks  
iPS-18c  iPS-18c tracks  
iPS-20b  iPS-20b tracks  
iPS_DF_19.11  iPS_DF_19.11 tracks  
iPS_DF_19.7  iPS_DF_19.7 tracks  
iPS_DF_4.7  iPS_DF_4.7 tracks  
iPS_DF_6.9  iPS_DF_6.9 tracks  
kidney  kidney tracks  
large_intestine  large_intestine tracks  
layer_of_hippocampus  layer_of_hippocampus tracks  
left_kidney  left_kidney tracks  
left_lung  left_lung tracks  
left_renal_cortex_interstitium  left_renal_cortex_interstitium tracks  
left_renal_pelvis  left_renal_pelvis tracks  
liver  liver tracks  
luminal_epithelial_cell_of_mammary_gland  luminal_epithelial_cell_of_mammary_gland tracks  
lung  lung tracks  
mammary_epithelial_cell  mammary_epithelial_cell tracks  
mammary_stem_cell  mammary_stem_cell tracks  
mesenchymal_stem_cell  mesenchymal_stem_cell tracks  
mesendoderm  mesendoderm tracks  
mesodermal_cell  mesodermal_cell tracks  
middle_frontal_area_46  middle_frontal_area_46 tracks  
mole  mole tracks  
mucosa_of_rectum  mucosa_of_rectum tracks  
mucosa_of_stomach  mucosa_of_stomach tracks  
muscle_layer_of_colon  muscle_layer_of_colon tracks  
muscle_layer_of_duodenum  muscle_layer_of_duodenum tracks  
muscle_of_arm  muscle_of_arm tracks  
muscle_of_back  muscle_of_back tracks  
muscle_of_leg  muscle_of_leg tracks  
muscle_of_trunk  muscle_of_trunk tracks  
myoepithelial_cell_of_mammary_gland  myoepithelial_cell_of_mammary_gland tracks  
naive_thymus-derived_CD4-positive,_alpha-beta_T_cell  naive_thymus-derived_CD4-positive,_alpha-beta_T_cell tracks  
natural_killer_cell  natural_killer_cell tracks  
neuron  neuron tracks  
neuronal_stem_cell  neuronal_stem_cell tracks  
neurosphere  neurosphere tracks  
neutrophil  neutrophil tracks  
ovary  ovary tracks  
pancreas  pancreas tracks  
peripheral_blood_mononuclear_cell  peripheral_blood_mononuclear_cell tracks  
placenta  placenta tracks  
placental_basal_plate  placental_basal_plate tracks  
psoas_muscle  psoas_muscle tracks  
rectal_smooth_muscle_tissue  rectal_smooth_muscle_tissue tracks  
regulatory_T_cell  regulatory_T_cell tracks  
renal_cortex_interstitium  renal_cortex_interstitium tracks  
renal_pelvis  renal_pelvis tracks  
right_cardiac_atrium  right_cardiac_atrium tracks  
right_kidney  right_kidney tracks  
right_lung  right_lung tracks  
right_renal_cortex_interstitium  right_renal_cortex_interstitium tracks  
right_renal_pelvis  right_renal_pelvis tracks  
sigmoid_colon  sigmoid_colon tracks  
skeletal_muscle_satellite_cell  skeletal_muscle_satellite_cell tracks  
skeletal_muscle_tissue  skeletal_muscle_tissue tracks  
skin_of_body  skin_of_body tracks  
small_intestine  small_intestine tracks  
spinal_cord  spinal_cord tracks  
spleen  spleen tracks  
stomach  stomach tracks  
stomach_smooth_muscle  stomach_smooth_muscle tracks  
subcutaneous_abdominal_adipose_tissue  subcutaneous_abdominal_adipose_tissue tracks  
substantia_nigra  substantia_nigra tracks  
T-cell  T-cell tracks  
T-helper_17_cell  T-helper_17_cell tracks  
temporal_lobe  temporal_lobe tracks  
testis  testis tracks  
thymus  thymus tracks  
trophoblast  trophoblast tracks  
trophoblast_cell  trophoblast_cell tracks  
UCSF-4  UCSF-4 tracks  
urinary_bladder  urinary_bladder tracks  
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF