ChIP-seq H3K36me3 Track Settings
 
Roadmap H3K36me3

Track collection: Roadmap ChIP-seq

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 All Output Type pseudoreplicated peaks  peaks  replicated peaks  signal p-value  fold change over control 
Sample Type
peripheral blood mononuclear cell 
chorionic villus 
placenta 
trophoblast 
placental basal plate 
chorion 
liver 
T-cell 
CD4-positive, CD25-positive, alpha-beta regulatory T cell 
naive thymus-derived CD4-positive, alpha-beta T cell 
skeletal muscle tissue 
CD8-positive, alpha-beta T cell 
temporal lobe 
CD8-positive, alpha-beta memory T cell 
spinal cord 
heart left ventricle 
esophagus 
subcutaneous abdominal adipose tissue 
muscle of leg 
large intestine 
adrenal gland 
kidney 
common myeloid progenitor, CD34-positive 
middle frontal area 46 
cingulate gyrus 
neurosphere 
ectodermal cell 
iPS-18a 
thymus 
foreskin keratinocyte 
muscle layer of duodenum 
myoepithelial cell of mammary gland 
endocrine pancreas 
IMR-90 
mammary stem cell 
layer of hippocampus 
neuronal stem cell 
iPS-15b 
mucosa of rectum 
muscle layer of colon 
iPS DF 6.9 
stomach 
small intestine 
pancreas 
lung 
H1 
stomach smooth muscle 
effector memory CD4-positive, alpha-beta T cell 
CD4-positive, alpha-beta T cell 
duodenal mucosa 
caudate nucleus 
brain 
foreskin melanocyte 
trophoblast cell 
CD4-positive, alpha-beta memory T cell 
aorta 
mesenchymal stem cell 
angular gyrus 
colonic mucosa 
neuron 
fibroblast of breast 
amnion 
foreskin fibroblast 
rectal smooth muscle tissue 
skeletal muscle satellite cell 
mammary epithelial cell 
regulatory T cell 
HUES64 
H7 
luminal epithelial cell of mammary gland 
B cell 
natural killer cell 
urinary bladder 
spleen 
mesendoderm 
germinal matrix 
muscle of trunk 
iPS DF 19.11 
CD14-positive monocyte 
mucosa of stomach 
sigmoid colon 
adipocyte 
heart right ventricle 
ovary 
psoas muscle 
substantia nigra 
endodermal cell 
H9 
HUES6 
HUES48 
neutrophil 
ES-I3 
heart 
UCSF-4 
iPS-20b 
mesodermal cell 
Sample Type
 All Output Type pseudoreplicated peaks  peaks  replicated peaks  signal p-value  fold change over control 
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Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays histone modification maps generated using ChIP-Seq for the Roadmap project. Experiments include various histone marks over a number of normal sample types. Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols: follow this link for experimental protocols.

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren Lab, UCSD

Bradley E. Berstein lab, Broad Institute

John Stamatoyannopoulos Lab, University of Washington

Joseph Costello Lab, UCSF