ChIP-seq H3K4me1 Track Settings

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Roadmap H3K4me1

Track collection: Roadmap ChIP-seq

Description

All tracks in this collection (31)

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Select subtracks by output type and sample type:

All	*Output Type*	peaks	pseudoreplicated peaks	replicated peaks	signal p-value	fold change over control
*Sample Type*
chorionic villus
placenta
peripheral blood mononuclear cell
placental basal plate
trophoblast
cingulate gyrus
common myeloid progenitor, CD34-positive
temporal lobe
lung
H1
large intestine
CD14-positive monocyte
CD4-positive, alpha-beta T cell
pancreas
stomach
right cardiac atrium
amnion
liver
neutrophil
angular gyrus
CD8-positive, alpha-beta T cell
CD4-positive, alpha-beta memory T cell
chorion
germinal matrix
aorta
psoas muscle
small intestine
stomach smooth muscle
muscle layer of duodenum
neurosphere
colonic mucosa
rectal smooth muscle tissue
duodenal mucosa
heart
naive thymus-derived CD4-positive, alpha-beta T cell
skeletal muscle tissue
trophoblast cell
neuronal stem cell
fibroblast of breast
brain
adrenal gland
subcutaneous abdominal adipose tissue
foreskin keratinocyte
muscle of leg
HUES6
caudate nucleus
adipocyte
skeletal muscle satellite cell
mucosa of stomach
myoepithelial cell of mammary gland
CD8-positive, alpha-beta memory T cell
ES-I3
ectodermal cell
effector memory CD4-positive, alpha-beta T cell
H7
luminal epithelial cell of mammary gland
middle frontal area 46
substantia nigra
iPS-20b
neuron
thymus
mesendoderm
heart left ventricle
IMR-90
HUES48
iPS DF 19.11
CD4-positive, CD25-positive, alpha-beta regulatory T cell
endocrine pancreas
mucosa of rectum
kidney
muscle layer of colon
T-cell
layer of hippocampus
iPS-18a
iPS-15b
mammary epithelial cell
foreskin fibroblast
natural killer cell
B cell
spinal cord
esophagus
foreskin melanocyte
ovary
muscle of trunk
UCSF-4
endodermal cell
iPS DF 6.9
spleen
urinary bladder
mesodermal cell
mesenchymal stem cell
heart right ventricle
sigmoid colon
HUES64
H9
*Sample Type*
All	*Output Type*	peaks	pseudoreplicated peaks	replicated peaks	signal p-value	fold change over control

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Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays histone modification maps generated using ChIP-Seq for the Roadmap project. Experiments include various histone marks over a number of normal sample types. Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols: follow this link for experimental protocols.

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren Lab, UCSD

Bradley E. Berstein lab, Broad Institute

John Stamatoyannopoulos Lab, University of Washington

Joseph Costello Lab, UCSF