ChIP-seq H3K4me3 Track Settings
 
Roadmap H3K4me3

Track collection: Roadmap ChIP-seq

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Sample Type
neurosphere 
chorionic villus 
placenta 
peripheral blood mononuclear cell 
cerebellum 
placental basal plate 
CD4-positive, alpha-beta memory T cell 
T-cell 
CD4-positive, CD25-positive, alpha-beta regulatory T cell 
H1 
iPS-18c 
angular gyrus 
brain 
CD8-positive, alpha-beta memory T cell 
stomach 
iPS DF 19.11 
lung 
sigmoid colon 
large intestine 
amnion 
endocrine pancreas 
common myeloid progenitor, CD34-positive 
middle frontal area 46 
mucosa of rectum 
effector memory CD4-positive, alpha-beta T cell 
kidney 
layer of hippocampus 
aorta 
urinary bladder 
adrenal gland 
IMR-90 
esophagus 
myoepithelial cell of mammary gland 
mucosa of stomach 
chorion 
muscle layer of colon 
skeletal muscle tissue 
naive thymus-derived CD4-positive, alpha-beta T cell 
trophoblast cell 
small intestine 
rectal smooth muscle tissue 
neuron 
heart left ventricle 
thymus 
heart right ventricle 
iPS-20b 
muscle layer of duodenum 
B cell 
substantia nigra 
heart 
liver 
regulatory T cell 
skeletal muscle satellite cell 
neuronal stem cell 
spleen 
caudate nucleus 
temporal lobe 
duodenal mucosa 
colonic mucosa 
iPS-15b 
iPS DF 6.9 
subcutaneous abdominal adipose tissue 
mammary epithelial cell 
germinal matrix 
CD8-positive, alpha-beta T cell 
right cardiac atrium 
foreskin fibroblast 
HUES48 
UCSF-4 
CD4-positive, alpha-beta T cell 
iPS-18a 
foreskin keratinocyte 
adipocyte 
neutrophil 
cingulate gyrus 
foreskin melanocyte 
stomach smooth muscle 
fibroblast of breast 
ovary 
natural killer cell 
spinal cord 
pancreas 
muscle of leg 
muscle of trunk 
endodermal cell 
HUES6 
mesenchymal stem cell 
HUES64 
H9 
ectodermal cell 
iPS-11a 
mesendoderm 
psoas muscle 
CD14-positive monocyte 
mesodermal cell 
Sample Type
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Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays histone modification maps generated using ChIP-Seq for the Roadmap project. Experiments include various histone marks over a number of normal sample types. Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols: follow this link for experimental protocols.

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren Lab, UCSD

Bradley E. Berstein lab, Broad Institute

John Stamatoyannopoulos Lab, University of Washington

Joseph Costello Lab, UCSF