ChIP-seq H3K9ac Track Settings
 
Roadmap H3K9ac

Track collection: Roadmap ChIP-seq

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Sample Type
foreskin melanocyte 
skeletal muscle tissue 
peripheral blood mononuclear cell 
colonic mucosa 
HUES48 
liver 
myoepithelial cell of mammary gland 
kidney 
CD8-positive, alpha-beta T cell 
subcutaneous abdominal adipose tissue 
neuronal stem cell 
rectal smooth muscle tissue 
endocrine pancreas 
duodenal mucosa 
iPS-20b 
muscle layer of colon 
foreskin keratinocyte 
mesendoderm 
H1 
HUES64 
mucosa of stomach 
temporal lobe 
mucosa of rectum 
iPS-15b 
cingulate gyrus 
middle frontal area 46 
adipocyte 
IMR-90 
trophoblast cell 
skeletal muscle satellite cell 
iPS-18a 
substantia nigra 
mesenchymal stem cell 
stomach smooth muscle 
H9 
lung 
caudate nucleus 
layer of hippocampus 
heart 
angular gyrus 
HUES6 
H7 
ES-I3 
endodermal cell 
Sample Type
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Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays histone modification maps generated using ChIP-Seq for the Roadmap project. Experiments include various histone marks over a number of normal sample types. Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols: follow this link for experimental protocols.

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren Lab, UCSD

Bradley E. Berstein lab, Broad Institute

John Stamatoyannopoulos Lab, University of Washington

Joseph Costello Lab, UCSF