ChIP-seq H3K9me1 Track Settings
 
Roadmap H3K9me1

Track collection: Roadmap ChIP-seq

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 IMR-90  IMR-90 ChIP-seq peaks    Data format 
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 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
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 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
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 IMR-90  IMR-90 ChIP-seq peaks    Data format 
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 IMR-90  IMR-90 ChIP-seq peaks    Data format 
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 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
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 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
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 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
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 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
dense
 IMR-90  IMR-90 ChIP-seq peaks    Data format 
dense
 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
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 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
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 IMR-90  IMR-90 ChIP-seq peaks    Data format 
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 IMR-90  IMR-90 ChIP-seq peaks    Data format 
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 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
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 IMR-90  IMR-90 ChIP-seq peaks    Data format 
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 Configure 		 IMR-90  IMR-90 H3K9me1 ChIP-seq signal    Data format 
    
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays histone modification maps generated using ChIP-Seq for the Roadmap project. Experiments include various histone marks over a number of normal sample types. Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols: follow this link for experimental protocols.

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren Lab, UCSD

Bradley E. Berstein lab, Broad Institute

John Stamatoyannopoulos Lab, University of Washington

Joseph Costello Lab, UCSF