ChIP-seq H3K9me3 Track Settings
 
Roadmap H3K9me3

Track collection: Roadmap ChIP-seq

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Sample Type
peripheral blood mononuclear cell 
chorionic villus 
placental basal plate 
trophoblast 
placenta 
ectodermal cell 
skeletal muscle satellite cell 
iPS-15b 
T-cell 
brain 
iPS-18c 
neuron 
angular gyrus 
substantia nigra 
duodenal mucosa 
naive thymus-derived CD4-positive, alpha-beta T cell 
effector memory CD4-positive, alpha-beta T cell 
liver 
amnion 
CD8-positive, alpha-beta T cell 
adrenal gland 
B cell 
lung 
H7 
common myeloid progenitor, CD34-positive 
CD4-positive, alpha-beta memory T cell 
germinal matrix 
heart left ventricle 
psoas muscle 
aorta 
HUES48 
colonic mucosa 
mammary epithelial cell 
mucosa of stomach 
T-helper 17 cell 
iPS-20b 
trophoblast cell 
layer of hippocampus 
kidney 
H9 
muscle of leg 
foreskin fibroblast 
spinal cord 
large intestine 
IMR-90 
esophagus 
H1 
HUES64 
temporal lobe 
skeletal muscle tissue 
CD8-positive, alpha-beta memory T cell 
regulatory T cell 
caudate nucleus 
pancreas 
subcutaneous abdominal adipose tissue 
stomach 
small intestine 
neutrophil 
cingulate gyrus 
neurosphere 
heart 
stomach smooth muscle 
fibroblast of breast 
muscle layer of duodenum 
iPS DF 19.11 
endocrine pancreas 
iPS DF 6.9 
foreskin keratinocyte 
myoepithelial cell of mammary gland 
foreskin melanocyte 
HUES6 
luminal epithelial cell of mammary gland 
mucosa of rectum 
mesenchymal stem cell 
iPS-18a 
muscle layer of colon 
middle frontal area 46 
thymus 
CD4-positive, alpha-beta T cell 
CD4-positive, CD25-positive, alpha-beta regulatory T cell 
right cardiac atrium 
ovary 
sigmoid colon 
UCSF-4 
neuronal stem cell 
heart right ventricle 
CD14-positive monocyte 
muscle of trunk 
adipocyte 
ES-I3 
spleen 
natural killer cell 
mesodermal cell 
endodermal cell 
Sample Type
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Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays histone modification maps generated using ChIP-Seq for the Roadmap project. Experiments include various histone marks over a number of normal sample types. Histone marks are critical epigenetic components. They are covalent modifications of amino acid residues of histone proteins, which modify protein's biochemical property and affect transcription and chromatin state. The histone marks are measured by ChIP-Seq experiments (chromatin immunoprecipitation followed by sequencing).

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols: follow this link for experimental protocols.

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren Lab, UCSD

Bradley E. Berstein lab, Broad Institute

John Stamatoyannopoulos Lab, University of Washington

Joseph Costello Lab, UCSF