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 All output type methylation state at CpG  methylation state at CHH  methylation state at CHG  signal  plus strand methylation state at CpG  minus strand methylation state at CpG  CpG sites coverage 
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CD14-positive monocyte 
small intestine 
large intestine 
esophagus 
neuronal stem cell 
adipose tissue 
ectodermal cell 
IMR-90 
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spleen 
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muscle of trunk 
heart 
lung 
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mesendoderm 
muscle of leg 
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heart left ventricle 
adrenal gland 
HUES64 
pancreas 
psoas muscle 
aorta 
right cardiac atrium 
ovary 
trophoblast cell 
thymus 
natural killer cell 
endodermal cell 
mesodermal cell 
sigmoid colon 
stomach 
heart right ventricle 
iPS DF 6.9 
iPS DF 19.11 
mesenchymal stem cell 
Sample Type
 All output type methylation state at CpG  methylation state at CHH  methylation state at CHG  signal  plus strand methylation state at CpG  minus strand methylation state at CpG  CpG sites coverage 
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Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays genomic maps generated by WGBS (Whole-Genome Bisulfite Sequencing) for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bradley E. Bernstein Lab, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington