microRNA-seq Track Settings
 
Roadmap microRNA-seq

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placenta 
foreskin keratinocyte 
amnion 
mammary epithelial cell 
foreskin fibroblast 
foreskin melanocyte 
germinal matrix 
luminal epithelial cell of mammary gland 
H1 
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cerebellum 
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area 11 of Brodmann 
endocrine pancreas 
chorion 
brain 
trophoblast 
fibroblast of breast 
chorionic villus 
UCSF-4 
placental basal plate 
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insula 
astrocyte 
Sample Type
 All output type minus strand signal of unique reads  plus strand signal of unique reads  plus strand signal of all reads  minus strand signal of all reads 
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Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays genomic maps generated by microRNA sequencing for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Joseph Costello, UCSF