small RNA-seq Track Settings

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Roadmap small RNA-seq

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Coverage ▾

Select subtracks by output type and sample type:

All	*output type*	minus strand signal of unique reads	plus strand signal of all reads	plus strand signal of unique reads	minus strand signal of all reads
*Sample Type*
mesendoderm
H1
neuronal stem cell
trophoblast cell
mesenchymal stem cell

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Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays genomic maps generated by small RNA sequencing for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in Joe Ecker Lab at Salk Institute for Biological Studies.