total RNA-seq Track Settings
 
Roadmap total RNA-seq

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dense
 Configure 		 minus strand signal of all reads  H1  H1 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 minus strand signal of all reads  H1  H1 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 minus strand signal of all reads  IMR-90  IMR-90 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 minus strand signal of all reads  IMR-90  IMR-90 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 minus strand signal of unique reads  H1  H1 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 minus strand signal of unique reads  H1  H1 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 minus strand signal of unique reads  IMR-90  IMR-90 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 minus strand signal of unique reads  IMR-90  IMR-90 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 plus strand signal of all reads  H1  H1 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 plus strand signal of all reads  H1  H1 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 plus strand signal of all reads  IMR-90  IMR-90 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 plus strand signal of all reads  IMR-90  IMR-90 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 plus strand signal of unique reads  H1  H1 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 plus strand signal of unique reads  H1  H1 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 plus strand signal of unique reads  IMR-90  IMR-90 total_RNA-seq Roadmap    Data format 
dense
 Configure 		 plus strand signal of unique reads  IMR-90  IMR-90 total_RNA-seq Roadmap    Data format 
    
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays genomic maps generated by rRNA-depleted total RNA sequencing for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in Joe Ecker Lab at Salk Institute for Biological Studies.