Sample Summary Tracks
 
Sample Summary tracks

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adipocyte Summary  Roadmap Epigenome adipocyte Summary  
adipose_tissue Summary  Roadmap Epigenome adipose_tissue Summary  
adrenal_gland Summary  Roadmap Epigenome adrenal_gland Summary  
amnion Summary  Roadmap Epigenome amnion Summary  
angular_gyrus Summary  Roadmap Epigenome angular_gyrus Summary  
aorta Summary  Roadmap Epigenome aorta Summary  
area_11_of_Brodmann Summary  Roadmap Epigenome area_11_of_Brodmann Summary  
astrocyte Summary  Roadmap Epigenome astrocyte Summary  
B_cell Summary  Roadmap Epigenome B_cell Summary  
brain Summary  Roadmap Epigenome brain Summary  
caudate_nucleus Summary  Roadmap Epigenome caudate_nucleus Summary  
CD14-positive_monocyte Summary  Roadmap Epigenome CD14-positive_monocyte Summary  
CD4-positive,_alpha-beta_memory_T_cell Summary  Roadmap Epigenome CD4-positive,_alpha-beta_memory_T_cell Summary  
CD4-positive,_alpha-beta_T_cell Summary  Roadmap Epigenome CD4-positive,_alpha-beta_T_cell Summary  
CD4-positive,_CD25-positive,_alpha-beta_regulatory_T_cell Summary  Roadmap Epigenome CD4-positive,_CD25-positive,_alpha-beta_regulatory_T_cell Summary  
CD8-positive,_alpha-beta_memory_T_cell Summary  Roadmap Epigenome CD8-positive,_alpha-beta_memory_T_cell Summary  
CD8-positive,_alpha-beta_T_cell Summary  Roadmap Epigenome CD8-positive,_alpha-beta_T_cell Summary  
cerebellum Summary  Roadmap Epigenome cerebellum Summary  
chorion Summary  Roadmap Epigenome chorion Summary  
chorionic_villus Summary  Roadmap Epigenome chorionic_villus Summary  
cingulate_gyrus Summary  Roadmap Epigenome cingulate_gyrus Summary  
colonic_mucosa Summary  Roadmap Epigenome colonic_mucosa Summary  
common_myeloid_progenitor,_CD34-positive Summary  Roadmap Epigenome common_myeloid_progenitor,_CD34-positive Summary  
duodenal_mucosa Summary  Roadmap Epigenome duodenal_mucosa Summary  
ectodermal_cell Summary  Roadmap Epigenome ectodermal_cell Summary  
effector_memory_CD4-positive,_alpha-beta_T_cell Summary  Roadmap Epigenome effector_memory_CD4-positive,_alpha-beta_T_cell Summary  
endocrine_pancreas Summary  Roadmap Epigenome endocrine_pancreas Summary  
endodermal_cell Summary  Roadmap Epigenome endodermal_cell Summary  
ES-I3 Summary  Roadmap Epigenome ES-I3 Summary  
esophagus Summary  Roadmap Epigenome esophagus Summary  
fibroblast_of_breast Summary  Roadmap Epigenome fibroblast_of_breast Summary  
fibroblast_of_skin_of_abdomen Summary  Roadmap Epigenome fibroblast_of_skin_of_abdomen Summary  
fibroblast_of_skin_of_back Summary  Roadmap Epigenome fibroblast_of_skin_of_back Summary  
fibroblast_of_skin_of_left_biceps Summary  Roadmap Epigenome fibroblast_of_skin_of_left_biceps Summary  
fibroblast_of_skin_of_left_quadriceps Summary  Roadmap Epigenome fibroblast_of_skin_of_left_quadriceps Summary  
fibroblast_of_skin_of_right_biceps Summary  Roadmap Epigenome fibroblast_of_skin_of_right_biceps Summary  
fibroblast_of_skin_of_right_quadriceps Summary  Roadmap Epigenome fibroblast_of_skin_of_right_quadriceps Summary  
fibroblast_of_skin_of_scalp Summary  Roadmap Epigenome fibroblast_of_skin_of_scalp Summary  
fibroblast_of_upper_back_skin Summary  Roadmap Epigenome fibroblast_of_upper_back_skin Summary  
forelimb_muscle Summary  Roadmap Epigenome forelimb_muscle Summary  
foreskin_fibroblast Summary  Roadmap Epigenome foreskin_fibroblast Summary  
foreskin_keratinocyte Summary  Roadmap Epigenome foreskin_keratinocyte Summary  
foreskin_melanocyte Summary  Roadmap Epigenome foreskin_melanocyte Summary  
germinal_matrix Summary  Roadmap Epigenome germinal_matrix Summary  
H1 Summary  Roadmap Epigenome H1 Summary  
H7 Summary  Roadmap Epigenome H7 Summary  
H9 Summary  Roadmap Epigenome H9 Summary  
heart Summary  Roadmap Epigenome heart Summary  
heart_left_ventricle Summary  Roadmap Epigenome heart_left_ventricle Summary  
heart_right_ventricle Summary  Roadmap Epigenome heart_right_ventricle Summary  
hematopoietic_multipotent_progenitor_cell Summary  Roadmap Epigenome hematopoietic_multipotent_progenitor_cell Summary  
hindlimb_muscle Summary  Roadmap Epigenome hindlimb_muscle Summary  
HUES48 Summary  Roadmap Epigenome HUES48 Summary  
HUES6 Summary  Roadmap Epigenome HUES6 Summary  
HUES64 Summary  Roadmap Epigenome HUES64 Summary  
IMR-90 Summary  Roadmap Epigenome IMR-90 Summary  
insula Summary  Roadmap Epigenome insula Summary  
iPS-11a Summary  Roadmap Epigenome iPS-11a Summary  
iPS-15b Summary  Roadmap Epigenome iPS-15b Summary  
iPS-18a Summary  Roadmap Epigenome iPS-18a Summary  
iPS-18c Summary  Roadmap Epigenome iPS-18c Summary  
iPS-20b Summary  Roadmap Epigenome iPS-20b Summary  
iPS_DF_19.11 Summary  Roadmap Epigenome iPS_DF_19.11 Summary  
iPS_DF_19.7 Summary  Roadmap Epigenome iPS_DF_19.7 Summary  
iPS_DF_4.7 Summary  Roadmap Epigenome iPS_DF_4.7 Summary  
iPS_DF_6.9 Summary  Roadmap Epigenome iPS_DF_6.9 Summary  
kidney Summary  Roadmap Epigenome kidney Summary  
large_intestine Summary  Roadmap Epigenome large_intestine Summary  
layer_of_hippocampus Summary  Roadmap Epigenome layer_of_hippocampus Summary  
left_kidney Summary  Roadmap Epigenome left_kidney Summary  
left_lung Summary  Roadmap Epigenome left_lung Summary  
left_renal_cortex_interstitium Summary  Roadmap Epigenome left_renal_cortex_interstitium Summary  
left_renal_pelvis Summary  Roadmap Epigenome left_renal_pelvis Summary  
liver Summary  Roadmap Epigenome liver Summary  
luminal_epithelial_cell_of_mammary_gland Summary  Roadmap Epigenome luminal_epithelial_cell_of_mammary_gland Summary  
lung Summary  Roadmap Epigenome lung Summary  
mammary_epithelial_cell Summary  Roadmap Epigenome mammary_epithelial_cell Summary  
mammary_stem_cell Summary  Roadmap Epigenome mammary_stem_cell Summary  
mesenchymal_stem_cell Summary  Roadmap Epigenome mesenchymal_stem_cell Summary  
mesendoderm Summary  Roadmap Epigenome mesendoderm Summary  
mesodermal_cell Summary  Roadmap Epigenome mesodermal_cell Summary  
middle_frontal_area_46 Summary  Roadmap Epigenome middle_frontal_area_46 Summary  
mole Summary  Roadmap Epigenome mole Summary  
mucosa_of_rectum Summary  Roadmap Epigenome mucosa_of_rectum Summary  
mucosa_of_stomach Summary  Roadmap Epigenome mucosa_of_stomach Summary  
muscle_layer_of_colon Summary  Roadmap Epigenome muscle_layer_of_colon Summary  
muscle_layer_of_duodenum Summary  Roadmap Epigenome muscle_layer_of_duodenum Summary  
muscle_of_arm Summary  Roadmap Epigenome muscle_of_arm Summary  
muscle_of_back Summary  Roadmap Epigenome muscle_of_back Summary  
muscle_of_leg Summary  Roadmap Epigenome muscle_of_leg Summary  
muscle_of_trunk Summary  Roadmap Epigenome muscle_of_trunk Summary  
myoepithelial_cell_of_mammary_gland Summary  Roadmap Epigenome myoepithelial_cell_of_mammary_gland Summary  
naive_thymus-derived_CD4-positive,_alpha-beta_T_cell Summary  Roadmap Epigenome naive_thymus-derived_CD4-positive,_alpha-beta_T_cell Summary  
natural_killer_cell Summary  Roadmap Epigenome natural_killer_cell Summary  
neuron Summary  Roadmap Epigenome neuron Summary  
neuronal_stem_cell Summary  Roadmap Epigenome neuronal_stem_cell Summary  
neurosphere Summary  Roadmap Epigenome neurosphere Summary  
neutrophil Summary  Roadmap Epigenome neutrophil Summary  
ovary Summary  Roadmap Epigenome ovary Summary  
pancreas Summary  Roadmap Epigenome pancreas Summary  
peripheral_blood_mononuclear_cell Summary  Roadmap Epigenome peripheral_blood_mononuclear_cell Summary  
placenta Summary  Roadmap Epigenome placenta Summary  
placental_basal_plate Summary  Roadmap Epigenome placental_basal_plate Summary  
psoas_muscle Summary  Roadmap Epigenome psoas_muscle Summary  
rectal_smooth_muscle_tissue Summary  Roadmap Epigenome rectal_smooth_muscle_tissue Summary  
regulatory_T_cell Summary  Roadmap Epigenome regulatory_T_cell Summary  
renal_cortex_interstitium Summary  Roadmap Epigenome renal_cortex_interstitium Summary  
renal_pelvis Summary  Roadmap Epigenome renal_pelvis Summary  
right_cardiac_atrium Summary  Roadmap Epigenome right_cardiac_atrium Summary  
right_kidney Summary  Roadmap Epigenome right_kidney Summary  
right_lung Summary  Roadmap Epigenome right_lung Summary  
right_renal_cortex_interstitium Summary  Roadmap Epigenome right_renal_cortex_interstitium Summary  
right_renal_pelvis Summary  Roadmap Epigenome right_renal_pelvis Summary  
sigmoid_colon Summary  Roadmap Epigenome sigmoid_colon Summary  
skeletal_muscle_satellite_cell Summary  Roadmap Epigenome skeletal_muscle_satellite_cell Summary  
skeletal_muscle_tissue Summary  Roadmap Epigenome skeletal_muscle_tissue Summary  
skin_of_body Summary  Roadmap Epigenome skin_of_body Summary  
small_intestine Summary  Roadmap Epigenome small_intestine Summary  
spinal_cord Summary  Roadmap Epigenome spinal_cord Summary  
spleen Summary  Roadmap Epigenome spleen Summary  
stomach Summary  Roadmap Epigenome stomach Summary  
stomach_smooth_muscle Summary  Roadmap Epigenome stomach_smooth_muscle Summary  
subcutaneous_abdominal_adipose_tissue Summary  Roadmap Epigenome subcutaneous_abdominal_adipose_tissue Summary  
substantia_nigra Summary  Roadmap Epigenome substantia_nigra Summary  
T-cell Summary  Roadmap Epigenome T-cell Summary  
T-helper_17_cell Summary  Roadmap Epigenome T-helper_17_cell Summary  
temporal_lobe Summary  Roadmap Epigenome temporal_lobe Summary  
testis Summary  Roadmap Epigenome testis Summary  
thymus Summary  Roadmap Epigenome thymus Summary  
trophoblast Summary  Roadmap Epigenome trophoblast Summary  
trophoblast_cell Summary  Roadmap Epigenome trophoblast_cell Summary  
UCSF-4 Summary  Roadmap Epigenome UCSF-4 Summary  
urinary_bladder Summary  Roadmap Epigenome urinary_bladder Summary  
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF