MGC/ORFeome Genes ORFeome Clones Track Settings
 
ORFeome Collaboration Gene Clones

Track collection: MGC/ORFeome Full ORF mRNA Clones

+  Description
+  All tracks in this collection (2)

Display mode:      Duplicate track

Color track by codons or bases: Help on mRNA coloring

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
Draw a vertical green line where query has a polyA tail insertion


Display data as a density graph:

Display data as a rearrangement graph:
Data schema/format description and download
Assembly: Mouse Dec. 2011 (GRCm38/mm10)
Data last updated at UCSC: 2018-10-16

Description

This track show alignments of mouse clones from the ORFeome Collaboration. The goal of the project is to be an "unrestricted source of fully sequence-validated full-ORF human cDNA clones in a format allowing easy transfer of the ORF sequences into virtually any type of expression vector. A major goal is to provide at least one fully-sequenced full-ORF clone for each human, mouse, and zebrafish gene. This track is updated automatically as new clones become available.

Display Conventions and Configuration

The track follows the display conventions for gene prediction tracks.

Methods

ORFeome mouse clones were obtained from GenBank and aligned against the genome using the blat program. When a single clone aligned in multiple places, the alignment having the highest base identity was found. Only alignments having a base identity level within 0.5% of the best and at least 96% base identity with the genomic sequence were kept.

Credits and References

Visit the ORFeome Collaboration members page for a list of credits and references.