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Configure Tracks on UCSC Genome Browser: Mouse Dec. 2011 (GRCm38/mm10)
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+   Mapping and Sequencing    
-   Genes and Gene Predictions    
GENCODE VM23 GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
NCBI RefSeq RefSeq genes from NCBI
GENCODE Versions Container of all new and previous GENCODE releases
     All GENCODE VM25     All GENCODE annotations from VM25 (Ensembl 100)
     All GENCODE VM24     All GENCODE annotations from VM24 (Ensembl 99)
     All GENCODE VM22     All GENCODE annotations from VM22 (Ensembl 97)
     All GENCODE VM18     All GENCODE annotations from VM18 (Ensembl 93)
     All GENCODE VM16     All GENCODE annotations from VM16 (Ensembl 91)
     All GENCODE VM14     All GENCODE annotations from VM14 (Ensembl 89)
     GENCODE VM11 (Ensembl 86)     Gene Annotations from ENCODE/GENCODE Version M11 (Ensembl 86)
     GENCODE VM9 (Ensembl 84)     Gene Annotations from ENCODE/GENCODE Version M9 (Ensembl 84)
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CCDS Consensus CDS
CRISPR 10K CRISPR/Cas9 Sp. Pyog. target sites (exons +/- 10,000 bp)
     CRISPR Regions 10K     Genome regions processed to find CRISPR/Cas9 target sites (exons +/- 10,000 bp)
CRISPR Targets CRISPR/Cas9 -NGG Targets, whole genome
     CRISPR Targets 10K     CRISPR/Cas9 -NGG Targets (exons +/- 10,000 bp)
     MGC Genes     Mammalian Gene Collection Full ORF mRNAs
MGC/ORFeome Genes MGC/ORFeome Full ORF mRNA Clones
Old UCSC Genes Previous Version of UCSC Genes
     ORFeome Clones     ORFeome Collaboration Gene Clones
Other RefSeq Non-Mouse RefSeq Genes
Pfam in UCSC Gene Pfam Domains in UCSC Genes
RetroGenes V6 Retroposed Genes V6, Including Pseudogenes
TOGA vs. hg38 TOGA annotations using human/hg38 as reference
TransMap V5 TransMap Alignments Version 5
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
UCSC Alt Events Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   Literature    
Lens Patents Lens PatSeq Patent Document Sequences
UniProt Variants UniProt/SwissProt Amino Acid Substitutions
+   mRNA and EST    
+   Expression and Regulation    
-   Comparative Genomics    
Conservation Vertebrate Multiz Alignment & Conservation (60 Species)
ClinVar Lift Human ClinVar variants lifted to Mouse
Euarch Chain/Net Euarchontoglire Genomes, Chain and Net Alignments
Glires Chain/Net Glires Genomes, Chain and Net Alignments
Placental Chain/Net Placental Genomes, Chain and Net Alignments
Vertebrate Chain/Net Vertebrate Genomes, Chain and Net Alignments
-   Variation and Repeats    
     All SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142)
Common SNPs(142) Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples
     Mult. SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci
     All SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138)
     Common SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples
     Mult. SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci
RepeatMasker Repeating Elements by RepeatMasker
     All SNPs(137)     Simple Nucleotide Polymorphisms (dbSNP 137)
     Common SNPs(137)     Simple Nucleotide Polymorphisms (dbSNP 137) Found in >= 1% of Samples
     Mult. SNPs(137)     Simple Nucleotide Polymorphisms (dbSNP 137) That Map to Multiple Genomic Loci
     Alignment     Alternate mouse strains, alignments to reference genome
     Alternate strains     Alternate mouse strains, mapped to their corresponding reference genome location
Alternate strains Alternate mouse strain sequences
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Mouse SNPs Annotated SNPs from mouse strain comparison analysis
dbSNP Archive dbSNP Track Archive
new EVA SNP Short Genetic Variants from European Variant Archive
RepeatMasker Viz. Detailed Visualization of RepeatMasker Annotations
Segmental Dups Duplications of >1000 Bases of Non-RepeatMasked Sequence
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust
-   other    
Geneid Genes Geneid Gene Predictions
Genscan Genes Genscan Gene Predictions
SGP Genes SGP Gene Predictions Using Mouse/Human Homology