Schema for flyBaseGene
  Database: dm2    Primary Table: flyBaseGene    Row Count: 19,452   Data last updated: 2006-10-11
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name CG11023-RAvarchar(255) values Name of gene
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 7528int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 9491int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 7679int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 9276int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 7528,8228,8667,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 8116,8589,9491,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        dm2.arbExpDistance.query (via flyBaseGene.name)
      dm2.arbExpDistance.target (via flyBaseGene.name)
      dm2.ceBlastTab.query (via flyBaseGene.name)
      dm2.drBlastTab.query (via flyBaseGene.name)
      dm2.flyBase2004Xref.name (via flyBaseGene.name)
      dm2.flyBaseBlastTab.query (via flyBaseGene.name)
      dm2.flyBaseBlastTab.target (via flyBaseGene.name)
      dm2.flyBaseCanonical.transcript (via flyBaseGene.name)
      dm2.flyBaseIsoforms.transcript (via flyBaseGene.name)
      dm2.flyBaseNoncoding.name (via flyBaseGene.name)
      dm2.flyBasePep.name (via flyBaseGene.name)
      dm2.flyBaseToCG.name (via flyBaseGene.name)
      dm2.flyBaseToDescription.name (via flyBaseGene.name)
      dm2.flyBaseToPfam.name (via flyBaseGene.name)
      dm2.flyBaseToRefSeq.name (via flyBaseGene.name)
      dm2.flyBaseToUniProt.name (via flyBaseGene.name)
      dm2.flyP2P.query (via flyBaseGene.name)
      dm2.flyP2P.target (via flyBaseGene.name)
      dm2.hgBlastTab.query (via flyBaseGene.name)
      dm2.mmBlastTab.query (via flyBaseGene.name)
      dm2.rnBlastTab.query (via flyBaseGene.name)
      dm2.scBlastTab.query (via flyBaseGene.name)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CG11023-RAchr2L+752894917679927637528,8228,8667,8116,8589,9491,
CG2671-RCchr2L-983518583112141713699835,11409,11778,12285,13519,13682,14932,17052,18260,11344,11518,12221,12928,13625,14874,15711,17212,18583,
CG2671-RBchr2L-983521372112141994499835,11409,11778,12285,13519,13682,14932,19884,21135,11344,11518,12221,12928,13625,14874,15711,20020,21372,
CG2671-RFchr2L-9835213721121415648109835,11409,11778,12285,13519,13682,14932,19879,21065,21348,11344,11518,12221,12928,13625,14874,15711,20020,21200,21372,
CG2671-REchr2L-983521372112141564899835,11409,11778,12285,13519,13682,14932,19879,21065,11344,11518,12221,12928,13625,14874,15711,20015,21372,
CG2671-RAchr2L-9835185831121417136109835,11409,11778,12285,13519,13682,14932,17052,18025,18260,11344,11518,12221,12928,13625,14874,15711,17212,18168,18583,
CG2671-RDchr2L-983521372112141564899835,11409,11778,12285,13519,13682,14932,19879,21065,11344,11518,12221,12928,13625,14874,15711,20020,21372,
CG2657-RAchr2L-21918238882191823888221918,22983,22687,23888,
CG31973-RBchr2L-254014014126520401411425401,26765,27052,28014,28732,28981,30393,33844,34557,34719,35745,38534,39300,40119,26688,26964,27490,28240,28926,29068,33270,34288,34604,35212,38298,38731,39857,40141,
CG31973-RAchr2L-254015924226520581501325401,26765,27052,28014,28732,28981,33844,34557,34719,38534,39300,58080,59189,26688,26964,27490,28240,28926,29068,34288,34604,35212,38731,39857,58182,59242,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.