Schema for rnBlastTab
  Database: dm2    Primary Table: rnBlastTab    Row Count: 3,015   Data last updated: 2007-04-03
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query CG9773-RAvarchar(255) values Name of sequence in this assembly (query)
target NM_138919varchar(255) values Name of sequence in other assembly (target)
identity 55.79float range Percent identity
aliLength 233int(10) unsigned range Length of alignment
mismatch 102int(10) unsigned range Number of mismatches
gapOpen 1int(10) unsigned range Number of gap openings
qStart 42int(10) unsigned range Start in query (0 based)
qEnd 274int(10) unsigned range End in query (non-inclusive)
tStart 25int(10) unsigned range Start in target (0 based)
tEnd 258int(10) unsigned range End in target (non-inclusive)
eValue 2e-71double range Expectation value
bitScore 264double range Bit score

Connected Tables and Joining Fields
        dm2.arbExpDistance.query (via rnBlastTab.query)
      dm2.arbExpDistance.target (via rnBlastTab.query)
      dm2.ceBlastTab.query (via rnBlastTab.query)
      dm2.drBlastTab.query (via rnBlastTab.query)
      dm2.flyBase2004Xref.name (via rnBlastTab.query)
      dm2.flyBaseBlastTab.query (via rnBlastTab.query)
      dm2.flyBaseBlastTab.target (via rnBlastTab.query)
      dm2.flyBaseCanonical.transcript (via rnBlastTab.query)
      dm2.flyBaseGene.name (via rnBlastTab.query)
      dm2.flyBaseIsoforms.transcript (via rnBlastTab.query)
      dm2.flyBaseNoncoding.name (via rnBlastTab.query)
      dm2.flyBasePep.name (via rnBlastTab.query)
      dm2.flyBaseToCG.name (via rnBlastTab.query)
      dm2.flyBaseToDescription.name (via rnBlastTab.query)
      dm2.flyBaseToPfam.name (via rnBlastTab.query)
      dm2.flyBaseToRefSeq.name (via rnBlastTab.query)
      dm2.flyBaseToUniProt.name (via rnBlastTab.query)
      dm2.flyP2P.query (via rnBlastTab.query)
      dm2.flyP2P.target (via rnBlastTab.query)
      dm2.hgBlastTab.query (via rnBlastTab.query)
      dm2.mmBlastTab.query (via rnBlastTab.query)
      dm2.scBlastTab.query (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
CG9773-RANM_13891955.79233102142274252582e-71264
CG5826-RANM_02254068.0619159141232652542e-74273
CG14749-RANM_00102573131.3433521053586773656961e-46182
CG3408-RANM_00100828045.09173912017301692.0000000000000003e-34141
CG32555-RAAY38708433.26956599193935119528e-157550
CG9333-RANM_00101391134.757314531030748167364e-133470
CG6815-RANM_00103492261.735882172058805800651
CG33544-RANM_20333537.91153853014301532e-1990.1
CG1869-RANM_05356048.13681815123491203785e-96347
CG8783-RBNM_00103493638.624352387042104207e-72266

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.