Schema for ceBlastTab
  Database: rn4    Primary Table: ceBlastTab    Row Count: 3,614   Data last updated: 2012-02-17
Format description: Blast alignments of C. elegans genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query RGD:2169varchar(255) values Name of sequence in this assembly (query)
target B0365.3varchar(255) values Name of sequence in other assembly (target)
identity 72.99float range Percent identity
aliLength 996int(10) unsigned range Length of alignment
mismatch 264int(10) unsigned range Number of mismatches
gapOpen 2int(10) unsigned range Number of gap openings
qStart 17int(10) unsigned range Start in query (0 based)
qEnd 1013int(10) unsigned range End in query (non-inclusive)
tStart 5int(10) unsigned range Start in target (0 based)
tEnd 996int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 1414double range Bit score

Connected Tables and Joining Fields
        rn4.affyExonTissuesGsMedianDistRgdGene2.query (via ceBlastTab.query)
      rn4.affyExonTissuesGsMedianDistRgdGene2.target (via ceBlastTab.query)
      rn4.affyExonTissuesGsMedianRgdGene2.name (via ceBlastTab.query)
      rn4.affyExonTissuesGsRgdGene2.name (via ceBlastTab.query)
      rn4.dmBlastTab.query (via ceBlastTab.query)
      rn4.drBlastTab.query (via ceBlastTab.query)
      rn4.gnfAtlas2RgdGene2Distance.query (via ceBlastTab.query)
      rn4.gnfAtlas2RgdGene2Distance.target (via ceBlastTab.query)
      rn4.hgBlastTab.query (via ceBlastTab.query)
      rn4.mmBlastTab.query (via ceBlastTab.query)
      rn4.rgdGene2.name (via ceBlastTab.query)
      rn4.rgdGene2BlastTab.query (via ceBlastTab.query)
      rn4.rgdGene2BlastTab.target (via ceBlastTab.query)
      rn4.rgdGene2Canonical.transcript (via ceBlastTab.query)
      rn4.rgdGene2Isoforms.transcript (via ceBlastTab.query)
      rn4.rgdGene2KeggPathway.rgdId (via ceBlastTab.query)
      rn4.rgdGene2Pep.name (via ceBlastTab.query)
      rn4.rgdGene2ToDescription.name (via ceBlastTab.query)
      rn4.rgdGene2ToDisplayId.name (via ceBlastTab.query)
      rn4.rgdGene2ToEnsembl.name (via ceBlastTab.query)
      rn4.rgdGene2ToGenbank.name (via ceBlastTab.query)
      rn4.rgdGene2ToGenbankAll.name (via ceBlastTab.query)
      rn4.rgdGene2ToGnfAtlas2.name (via ceBlastTab.query)
      rn4.rgdGene2ToKeggEntrez.name (via ceBlastTab.query)
      rn4.rgdGene2ToLocusLink.name (via ceBlastTab.query)
      rn4.rgdGene2ToPDB.name (via ceBlastTab.query)
      rn4.rgdGene2ToPfam.name (via ceBlastTab.query)
      rn4.rgdGene2ToRAE230.name (via ceBlastTab.query)
      rn4.rgdGene2ToRefSeq.name (via ceBlastTab.query)
      rn4.rgdGene2ToSymbol.rgdId (via ceBlastTab.query)
      rn4.rgdGene2ToU34A.name (via ceBlastTab.query)
      rn4.rgdGene2ToUniProt.name (via ceBlastTab.query)
      rn4.rgdGene2Xref.rgdGeneId (via ceBlastTab.query)
      rn4.rgdGenePathway.geneId (via ceBlastTab.query)
      rn4.scBlastTab.query (via ceBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
RGD:2169B0365.372.999962642171013599601414
RGD:2170F55F3.330.3330018380291132967e-32134
RGD:2162M02D8.4a38.245442891925557315403e-72269
RGD:2160C25B8.4b33.33123676152264932120.00000000458.5
RGD:2156F53H8.253.374161658439884171e-89326
RGD:2154C25A1.1148.83383166952435333864.999999999999999e-90328
RGD:2151T21F4.136.89206122596299752761e-25113
RGD:2146C32C4.237.5224125339250132351.0000000000000001e-29126
RGD:2139C42D8.8b29.02448261133717662376812e-36150
RGD:2126R09B3.1a45.31256134561315342861e-58223

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.