Schema for rgdGene2Pep
  Database: rn4    Primary Table: rgdGene2Pep    Row Count: 13,115   Data last updated: 2010-10-18
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name RGD:1302933varchar(255) values Name of gene
seq MQALLFLMALVLPSGAGAEEIVGGVES...longblob   mRNA sequence

Connected Tables and Joining Fields
        rn4.affyExonTissuesGsMedianDistRgdGene2.query (via rgdGene2Pep.name)
      rn4.affyExonTissuesGsMedianDistRgdGene2.target (via rgdGene2Pep.name)
      rn4.affyExonTissuesGsMedianRgdGene2.name (via rgdGene2Pep.name)
      rn4.affyExonTissuesGsRgdGene2.name (via rgdGene2Pep.name)
      rn4.ceBlastTab.query (via rgdGene2Pep.name)
      rn4.dmBlastTab.query (via rgdGene2Pep.name)
      rn4.drBlastTab.query (via rgdGene2Pep.name)
      rn4.gnfAtlas2RgdGene2Distance.query (via rgdGene2Pep.name)
      rn4.gnfAtlas2RgdGene2Distance.target (via rgdGene2Pep.name)
      rn4.hgBlastTab.query (via rgdGene2Pep.name)
      rn4.mmBlastTab.query (via rgdGene2Pep.name)
      rn4.rgdGene2.name (via rgdGene2Pep.name)
      rn4.rgdGene2BlastTab.query (via rgdGene2Pep.name)
      rn4.rgdGene2BlastTab.target (via rgdGene2Pep.name)
      rn4.rgdGene2Canonical.transcript (via rgdGene2Pep.name)
      rn4.rgdGene2Isoforms.transcript (via rgdGene2Pep.name)
      rn4.rgdGene2KeggPathway.rgdId (via rgdGene2Pep.name)
      rn4.rgdGene2ToDescription.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToDisplayId.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToEnsembl.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToGenbank.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToGenbankAll.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToGnfAtlas2.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToKeggEntrez.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToLocusLink.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToPDB.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToPfam.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToRAE230.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToRefSeq.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToSymbol.rgdId (via rgdGene2Pep.name)
      rn4.rgdGene2ToU34A.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToUniProt.name (via rgdGene2Pep.name)
      rn4.rgdGene2Xref.rgdGeneId (via rgdGene2Pep.name)
      rn4.rgdGenePathway.geneId (via rgdGene2Pep.name)
      rn4.scBlastTab.query (via rgdGene2Pep.name)

Sample Rows
 
nameseq
RGD:1302933MQALLFLMALVLPSGAGAEEIVGGVESIPHSRPYMAHLKITTEKGYVTFCGGFLISRQFVLTAAHCNGREITVTLGAHDVSKRESTQQKLKVEKQIIHKNYNFFSNIHDIMLLKLEKQVELTPAVDVV ...
RGD:1302934MRYADPSANRDLLGNRTLLFIFICAFALVTLLQQILYSKSYIKRYFEFYKEPLEFNSTRCLELRQEILEVKVLSMVKQSELFERWKSLQICKWAMDASEASLFKSTLSRCCNAPNFLFTTQKNTPVET ...
RGD:1302935MSGPSSWRRAATVMLAAGWSHASPAGFRLLLLQRAQNQRFMPGAHVFPGGVLDAADSSPDWVSLFAPRHTPPRFGLGPEPPRQPSFPGLFHGDADGAALPDDVALRICAIRETFEEAGVLLLRPRDSA ...
RGD:1302936MCWLLLWGILHTCPTQASVLLAQQFPQQLTSPGYPEPYIKGQESHADIEAPEGFAVRLIFQDFDLEPSPGCEGDSVTISTRGTDATRLCGQQGSSLGSPPNQMEFVSSGRSLRLTFRAHSSKNKVTHL ...
RGD:1302937MSCRFQSSSMSYGGGFGAGSCQLGGGRNISTCSSRFVTGGSSGGYGGGMSCGFGGGAGGGYGGGFGGGFGGSCGGGFGGGFGDFGSVDGGLLSGNEKITMQNLNDRLASYLEKVRALEAANADLEVKI ...
RGD:1302938MFLFLFFLVAVLPVNTEGGEIIWGTESKPHSRPYMAFIKFYDSNSEPQSCGGFLVAKDIVMTAAHCNGRNIKVTLGAHNIRKRENTQVISVVKAKPHENYDKHSRFNDIMLLKVERKAQLNGAVKTIA ...
RGD:1302939MAAGTLYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQAT ...
RGD:1302940MIEEAIETAQRYNSQPILKRQKPIRPYICSTIDFQDERDFLAKTIFPQLNDFCSSRGTYFKAVDLRWSALKAHKSFTNNQFRQYSCLHSQHLKLCLDYVNRCFPFFICLLGQTYGDFLPDYTPFLLSK ...
RGD:1302941MLGTVNTTGMQGFNKSERCPRDTRMTQLLFPVLYTVVFFTGVLLNTLALWVFIHIPSNSTFIIYLKNTLVADLIMTLMLPFKILSDSRLAPWQLRGFVCTFSSVVFYETMYVGIMMLGLIAFDRFLKI ...
RGD:1302944MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQAT ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.